WormBase Tree Display for Gene: WBGene00003739
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| WBGene00003739 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nlp-1 | Person_evidence | WBPerson242 | |||||
| Sequence_name | C01C4.1 | ||||||||
| Molecular_name | C01C4.1 | ||||||||
| C01C4.1.1 | |||||||||
| CE29554 | |||||||||
| Other_name | CELE_C01C4.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nlp-1 | ||||||||
| DB_info | Database | AceView | gene | XE347 | |||||
| WormQTL | gene | WBGene00003739 | |||||||
| WormFlux | gene | WBGene00003739 | |||||||
| NDB | locus_tag | CELE_C01C4.1 | |||||||
| NCBI | gene | 180661 | |||||||
| RefSeq | protein | NM_076239.6 | |||||||
| SwissProt | UniProtAcc | Q11088 | |||||||
| TREEFAM | TREEFAM_ID | TF319435 | |||||||
| UniProt_GCRP | UniProtAcc | Q11088 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nlp | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00032039 | ||||||||
| WBStrain00032040 | |||||||||
| WBStrain00055092 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00057156 | ||||||||
| 00057157 | |||||||||
| 00057158 | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Concise_description | nlp-1 encodes a predicted neuropeptide-like protein of the MSFamide family with similarity to Aplysia californica (sea hare) buccalin, a neuropeptide that regulates acetylcholine-induced muscle contraction; NLP-1 is expressed in the phasmid PHB tail sensory neuron, lateral neurons, head neurons, and the intestine; the precise role of NLP-1 in nervous system function and development is not yet known. | Paper_evidence | WBPaper00003915 | |||||
| WBPaper00004975 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in cellular response to carbon dioxide; negative regulation of pharyngeal pumping; and thigmotaxis. Expressed in intestine; lateral ganglion; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C01C4.1 | |||||||
| Corresponding_transcript | C01C4.1.1 | ||||||||
| Other_sequence | CB042955.1 | ||||||||
| Oden_isotig25217 | |||||||||
| CBC05511_1 | |||||||||
| TDC00405_1 | |||||||||
| ACC02425_1 | |||||||||
| Acan_isotig16959 | |||||||||
| OOC03656_1 | |||||||||
| Associated_feature | WBsf1004698 | ||||||||
| WBsf1022660 | |||||||||
| WBsf1022661 | |||||||||
| WBsf235518 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009911 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039294 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012 | ||||||||
| Expr1686 | |||||||||
| Expr1029200 | |||||||||
| Expr1143412 | |||||||||
| Expr2014284 | |||||||||
| Expr2032524 | |||||||||
| Marker88 | |||||||||
| Drives_construct (14) | |||||||||
| Construct_product | WBCnstr00010021 | ||||||||
| WBCnstr00035904 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (199) | |||||||||
| Interaction (122) | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Map | X | Position | -9.71278 | Error | 0.01404 | |||
| Positive | Positive_clone | C01C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5161 | |||||||
| 5649 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
