WormBase Tree Display for Gene: WBGene00003728
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WBGene00003728 | SMap | S_parent | Sequence | C28D4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nhr-138 | Person_evidence | WBPerson600 | |||||
Sequence_name | C28D4.9 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_C28D4.9 | Accession_evidence | NDB | BX284604 | |||||
Public_name | nhr-138 | ||||||||
DB_info | Database | AceView | gene | 4K495 | |||||
WormQTL | gene | WBGene00003728 | |||||||
WormFlux | gene | WBGene00003728 | |||||||
NDB | locus_tag | CELE_C28D4.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003728|UniProtKB=Q95QT4 | |||||||
family | PTHR47630 | ||||||||
NCBI | gene | 3565904 | |||||||
RefSeq | protein | NM_069329.9 | |||||||
TREEFAM | TREEFAM_ID | TF315528 | |||||||
TrEMBL | UniProtAcc | Q95QT4 | |||||||
UniProt_GCRP | UniProtAcc | Q95QT4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 02 Mar 2018 10:40:20 | WBPerson4025 | Event | Split_into | WBGene00303043 | ||||
Split_into | WBGene00303043 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (34) | |||||||||
Strain | WBStrain00036714 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00088597 | ||||||||
00088598 | |||||||||
00088599 | |||||||||
00088600 | |||||||||
00111709 | |||||||||
00111710 | |||||||||
00111711 | |||||||||
00111712 | |||||||||
Contained_in_operon | CEOP4336 | ||||||||
Ortholog (33) | |||||||||
Paralog (217) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C28D4.9 | |||||||
Corresponding_CDS_history | C28D4.9:wp92 | ||||||||
C28D4.9:wp109 | |||||||||
C28D4.9a:wp264 | |||||||||
C28D4.9b:wp264 | |||||||||
Corresponding_transcript | C28D4.9.1 | ||||||||
Other_sequence | CJC07132_1 | ||||||||
Associated_feature | WBsf646249 | ||||||||
WBsf659800 | |||||||||
WBsf716577 | |||||||||
WBsf717174 | |||||||||
WBsf718161 | |||||||||
WBsf997466 | |||||||||
WBsf1017992 | |||||||||
WBsf228862 | |||||||||
WBsf228863 | |||||||||
WBsf228864 | |||||||||
Transcription_factor | WBTranscriptionFactor000367 | ||||||||
Experimental_info | RNAi_result | WBRNAi00041414 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00011297 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076172 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025967 | ||||||||
Expr1031740 | |||||||||
Expr1145445 | |||||||||
Expr2014038 | |||||||||
Expr2032278 | |||||||||
Drives_construct | WBCnstr00035913 | ||||||||
Construct_product | WBCnstr00035913 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (81) | |||||||||
Interaction | WBInteraction000526754 | ||||||||
WBInteraction000526817 | |||||||||
WBInteraction000526818 | |||||||||
WBInteraction000526819 | |||||||||
WBInteraction000530574 | |||||||||
WBInteraction000543711 | |||||||||
Map_info | Map | IV | Position | 4.38835 | Error | 0.000496 | |||
Positive | Positive_clone | C28D4 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference (2) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |