WormBase Tree Display for Gene: WBGene00003705
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| WBGene00003705 | SMap | S_parent | Sequence | T27B7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-115 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T27B7.4 | ||||||||
| Molecular_name | T27B7.4a | ||||||||
| T27B7.4a.1 | |||||||||
| CE35785 | |||||||||
| T27B7.4b | |||||||||
| CE43382 | |||||||||
| T27B7.4b.1 | |||||||||
| Other_name | CELE_T27B7.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | nhr-115 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (115) | |||||||||
| Strain | WBStrain00036491 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006410 | ||||||||
| 00028431 | |||||||||
| 00028432 | |||||||||
| 00028433 | |||||||||
| 00028434 | |||||||||
| 00111617 | |||||||||
| 00111618 | |||||||||
| 00111619 | |||||||||
| 00111620 | |||||||||
| Ortholog (24) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | nhr-115 encodes a nuclear receptor that is most highly conserved amongst nematode species. | Paper_evidence | WBPaper00027309 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Involved in innate immune response. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T27B7.4a | |||||||
| T27B7.4b | |||||||||
| Corresponding_CDS_history | T27B7.4:wp109 | ||||||||
| Corresponding_transcript | T27B7.4a.1 | ||||||||
| T27B7.4b.1 | |||||||||
| Associated_feature | WBsf646705 | ||||||||
| WBsf661159 | |||||||||
| WBsf231500 | |||||||||
| Transcription_factor | WBTranscriptionFactor000532 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00054276 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019310 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115853 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023934 | ||||||||
| Expr1157826 | |||||||||
| Expr2014013 | |||||||||
| Expr2032253 | |||||||||
| Drives_construct | WBCnstr00035930 | ||||||||
| Construct_product | WBCnstr00035930 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (163) | |||||||||
| Map_info | Map | V | Position | -14.9195 | |||||
| Positive | Positive_clone | T27B7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 5583 | |||||||
| 4829 | |||||||||
| 4860 | |||||||||
| 5418 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-14.9582) | |||||||||
| Method | Gene |
