WormBase Tree Display for Gene: WBGene00003699
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| WBGene00003699 | SMap | S_parent | Sequence | T12C9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | nhr-109 | Person_evidence | WBPerson600 | |||||
| Sequence_name | T12C9.5 | ||||||||
| Molecular_name (13) | |||||||||
| Other_name | CELE_T12C9.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | nhr-109 | ||||||||
| DB_info | Database | AceView | gene | 2E725 | |||||
| WormQTL | gene | WBGene00003699 | |||||||
| WormFlux | gene | WBGene00003699 | |||||||
| NDB | locus_tag | CELE_T12C9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00003699|UniProtKB=H2L0L6 | |||||||
| family | PTHR46011 | ||||||||
| NCBI | gene | 173780 | |||||||
| RefSeq | protein | NM_001381389.1 | |||||||
| NM_001027170.5 | |||||||||
| NM_001393051.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF315401 | |||||||
| TrEMBL | UniProtAcc | Q7JP54 | |||||||
| Q9U371 | |||||||||
| H2L0L6 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L0L6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00036695 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (69) | |||||||||
| Paralog (218) | |||||||||
| Structured_description | Concise_description | nhr-109 encodes a nuclear receptor that is most highly conserved amongst nematode species. | Paper_evidence | WBPaper00027309 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T12C9.5a | |||||||
| T12C9.5b | |||||||||
| T12C9.5c | |||||||||
| Corresponding_CDS_history | T12C9.5:wp94 | ||||||||
| Corresponding_transcript | T12C9.5a.1 | ||||||||
| T12C9.5a.2 | |||||||||
| T12C9.5a.3 | |||||||||
| T12C9.5a.4 | |||||||||
| T12C9.5a.5 | |||||||||
| T12C9.5b.1 | |||||||||
| T12C9.5c.1 | |||||||||
| Associated_feature | WBsf644104 | ||||||||
| WBsf987599 | |||||||||
| WBsf221126 | |||||||||
| Transcription_factor | WBTranscriptionFactor000368 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00084678 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00053197 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018416 | ||||||||
| Expr1031724 | |||||||||
| Expr1156787 | |||||||||
| Expr2014006 | |||||||||
| Expr2032246 | |||||||||
| Microarray_results (31) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction | WBInteraction000505226 | ||||||||
| WBInteraction000526763 | |||||||||
| WBInteraction000526764 | |||||||||
| WBInteraction000526882 | |||||||||
| WBInteraction000527443 | |||||||||
| WBInteraction000529087 | |||||||||
| WBInteraction000529360 | |||||||||
| WBInteraction000530620 | |||||||||
| WBInteraction000531859 | |||||||||
| Map_info | Map | II | Position | -4.47022 | Error | 0.018607 | |||
| Positive | Positive_clone | T12C9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
