WormBase Tree Display for Gene: WBGene00003619
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WBGene00003619 | Evidence | Paper_evidence | WBPaper00003416 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F43C1 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | nhr-20 | Person_evidence | WBPerson600 | |||||
Sequence_name | F43C1.4 | ||||||||
Molecular_name | F43C1.4 | ||||||||
F43C1.4.1 | |||||||||
CE28025 | |||||||||
Other_name | CELE_F43C1.4 | Accession_evidence | NDB | BX284603 | |||||
Public_name | nhr-20 | ||||||||
DB_info | Database | AceView | gene | 3F320 | |||||
WormQTL | gene | WBGene00003619 | |||||||
WormFlux | gene | WBGene00003619 | |||||||
NDB | locus_tag | CELE_F43C1.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003619|UniProtKB=Q09565 | |||||||
family | PTHR46397 | ||||||||
NCBI | gene | 175546 | |||||||
RefSeq | protein | NM_065448.7 | |||||||
SwissProt | UniProtAcc | Q09565 | |||||||
TREEFAM | TREEFAM_ID | TF321941 | |||||||
UniProt_GCRP | UniProtAcc | Q09565 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nhr | ||||||||
Allele (45) | |||||||||
Legacy_information (2) | |||||||||
Strain | WBStrain00002155 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00054762 | ||||||||
00054763 | |||||||||
00054764 | |||||||||
00054765 | |||||||||
00054766 | |||||||||
00054767 | |||||||||
00111278 | |||||||||
00111279 | |||||||||
00111280 | |||||||||
00111281 | |||||||||
Ortholog (29) | |||||||||
Paralog (225) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in head and tail. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F43C1.4 | |||||||
Corresponding_CDS_history | F43C1.4:wp52 | ||||||||
Corresponding_transcript | F43C1.4.1 | ||||||||
Other_sequence | ES744626.1 | ||||||||
CBC14188_1 | |||||||||
HBC13051_1 | |||||||||
Associated_feature | WBsf716539 | ||||||||
WBsf978692 | |||||||||
WBsf992069 | |||||||||
WBsf992070 | |||||||||
WBsf1014726 | |||||||||
WBsf226493 | |||||||||
WBsf226494 | |||||||||
Transcription_factor | WBTranscriptionFactor000287 | ||||||||
Experimental_info | RNAi_result | WBRNAi00005221 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00032172 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047163 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1185 | ||||||||
Expr6057 | |||||||||
Expr6058 | |||||||||
Expr7556 | |||||||||
Expr1017934 | |||||||||
Expr1031665 | |||||||||
Expr1151024 | |||||||||
Expr2014113 | |||||||||
Expr2032352 | |||||||||
Drives_construct (5) | |||||||||
Construct_product | WBCnstr00010137 | ||||||||
WBCnstr00016480 | |||||||||
WBCnstr00021750 | |||||||||
WBCnstr00035995 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (113) | |||||||||
Interaction (65) | |||||||||
Map_info | Map | III | Position | -3.52868 | Error | 0.059109 | |||
Positive | Positive_clone | F43C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00003754 | ||||||||
WBPaper00012651 | |||||||||
WBPaper00015440 | |||||||||
WBPaper00022044 | |||||||||
WBPaper00027309 | |||||||||
WBPaper00062625 | |||||||||
Remark | Map III Position -3.810000 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |