WormBase Tree Display for Gene: WBGene00003579
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| WBGene00003579 | SMap | S_parent | Sequence | W02G9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ndx-2 | Person_evidence | WBPerson3090 | |||||
| Sequence_name | W02G9.1 | ||||||||
| Molecular_name | W02G9.1 | ||||||||
| W02G9.1.1 | |||||||||
| CE18314 | |||||||||
| Other_name | CELE_W02G9.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ndx-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:32 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ndx | ||||||||
| Allele (52) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00036590 | ||||||||
| 00036591 | |||||||||
| 00036592 | |||||||||
| 00036593 | |||||||||
| 00036594 | |||||||||
| 00036595 | |||||||||
| 00036596 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00008238 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ndx-2 encodes a NUDIX hydrolase; by sequence comparison, NDX-2 is predicted to be orthologous to human NUDT5 which, in vitro, possesses ADP-sugar diphosphatase activity; in C. elegans, loss of ndx-2 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, consistent with the proposed nonessential roles for Nudix proteins in eliminating potentially toxic nucleotide metabolites from cells and modulating levels of metabolic intermediates by shuttling them into alternative biochemical pathways. | Paper_evidence | WBPaper00004210 | |||||
| WBPaper00005401 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00012785 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ADP-ribose diphosphatase activity. Predicted to be involved in nucleoside phosphate metabolic process and ribose phosphate metabolic process. Predicted to be located in nucleus. Is an ortholog of human NUDT5 (nudix hydrolase 5). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W02G9.1 | |||||||
| Corresponding_transcript | W02G9.1.1 | ||||||||
| Other_sequence | CJC01768_1 | ||||||||
| JO469112.1 | |||||||||
| JI179404.1 | |||||||||
| SC01369 | |||||||||
| AS01858 | |||||||||
| ES740824.1 | |||||||||
| Hbac_isotig04420 | |||||||||
| HBC27654_1 | |||||||||
| GR978325.1 | |||||||||
| ASC02621_1 | |||||||||
| Associated_feature | WBsf652510 | ||||||||
| WBsf233426 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019514 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054622 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036206 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025759 | ||||||||
| Expr1158167 | |||||||||
| Expr2013943 | |||||||||
| Expr2032182 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction (78) | |||||||||
| Map_info | Map | V | Position | -13.3803 | Error | 0.017801 | |||
| Positive | Positive_clone | W02G9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005401 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044725 | |||||||||
| WBPaper00051728 | |||||||||
| WBPaper00051859 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055664 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
