WormBase Tree Display for Gene: WBGene00003340
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| WBGene00003340 | Evidence | Paper_evidence | WBPaper00005825 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK593 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-246 | Person_evidence | WBPerson18 | |||||
| Sequence_name | ZK593.10 | ||||||||
| Molecular_name | ZK593.10 | ||||||||
| ZK593.10a | |||||||||
| ZK593.10b | |||||||||
| Other_name | cel-mir-246 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_ZK593.10 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | mir-246 | ||||||||
| DB_info | Database | miRBase | acc | MI0000322 | |||||
| SignaLink | mirna | cel-mir-246 | |||||||
| MirGeneDB | cel | Cel-Mir-246 | |||||||
| NDB | locus_tag | CELE_ZK593.10 | |||||||
| NCBI | gene | 3565660 | |||||||
| RefSeq | protein | NR_002392.2 | |||||||
| RNAcentral | URSid | URS00003FEF66 | |||||||
| URS00005641F3 | |||||||||
| URS000057CDE2 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele (15) | |||||||||
| Strain | WBStrain00027504 | ||||||||
| In_cluster | MIR-246 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-246 encodes a microRNA, a small non-protein coding RNA and has a potential ortholog in the nematode C. brigssae; mir-246 is weakly expressed at the L4 larval stage and in adults in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-246 is unknown. | Paper_evidence | WBPaper00005825 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 24 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including daf-12; eat-2; and prg-1 based on tiling array and RNA-seq studies. Is affected by graphene oxide based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | ZK593.10 | |||||||
| ZK593.10a | |||||||||
| ZK593.10b | |||||||||
| Experimental_info | Expr_pattern | Expr2527 | |||||||
| Expr8429 | |||||||||
| Expr10958 | |||||||||
| Drives_construct | WBCnstr00005543 | ||||||||
| Expression_cluster (31) | |||||||||
| Interaction | WBInteraction000504699 | ||||||||
| WBInteraction000544769 | |||||||||
| WBInteraction000550024 | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| WBbiopr:00000074 | |||||||||
| Map_info | Map | IV | Position | 4.76098 | Error | 0.00104 | |||
| Positive | Positive_clone | ZK593 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
