WormBase Tree Display for Gene: WBGene00003333
expand all nodes | collapse all nodes | view schema
WBGene00003333 | Evidence | Paper_evidence (2) | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C34E11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | mir-239.2 | Person_evidence | WBPerson18 | |||||
Sequence_name | C34E11.6 | ||||||||
Molecular_name | C34E11.6 | ||||||||
C34E11.6a | |||||||||
C34E11.6b | |||||||||
Other_name | mir-239b | Remark | miRBase V21 import | ||||||
cel-mir-239b | Remark | miRBase V21 import | |||||||
Cel-Mir-305-P2 | Remark | MirGeneDB 2.1 import | |||||||
CELE_C34E11.6 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | mir-239.2 | ||||||||
DB_info | Database | miRBase | acc | MI0000315 | |||||
SignaLink | mirna | cel-mir-239b | |||||||
MirGeneDB | cel | Cel-Mir-305-P2 | |||||||
NDB | locus_tag | CELE_C34E11.6 | |||||||
NCBI | gene | 3565868 | |||||||
RefSeq | protein | NR_002416.2 | |||||||
RNAcentral | URSid | URS0000506BCE | |||||||
URS0000587B0A | |||||||||
URS00005BB985 | |||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001265 | |||||||
Gene_class | mir | ||||||||
Allele | WBVar01499887 | ||||||||
WBVar01499888 | |||||||||
WBVar01499710 | |||||||||
WBVar02123435 | |||||||||
WBVar00518188 | |||||||||
WBVar02123487 | |||||||||
WBVar00323168 | |||||||||
WBVar02123334 | |||||||||
WBVar01498960 | |||||||||
WBVar01500067 | |||||||||
In_cluster | MIR-305 | ||||||||
RNASeq_FPKM (74) | |||||||||
Structured_description | Concise_description | mir-239.2 encodes a microRNA, a small non-protein coding RNA and appears to have a potential ortholog in C. briggsae; miR-239.2 is weakly expressed in the embryo and strongly expressed at all other stages of development in normal worms and in glp-4(bn2) mutant worms; many of the known microRNAs are involved in post-transcriptional regulation of genes. | Paper_evidence | WBPaper00005825 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 08 Feb 2005 00:00:00 | ||||||||
Automated_description | Is affected by several genes including daf-12; eat-2; and prg-1 based on tiling array and RNA-seq studies. Is affected by graphene oxide; sodium arsenite; and paraquat based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_transcript | C34E11.6 | |||||||
C34E11.6a | |||||||||
C34E11.6b | |||||||||
Associated_feature | WBsf1007113 | ||||||||
WBsf1023937 | |||||||||
Experimental_info | Expr_pattern | Expr2514 | |||||||
Expr10921 | |||||||||
Expression_cluster (36) | |||||||||
Interaction | WBInteraction000500576 | ||||||||
WBInteraction000500577 | |||||||||
WBProcess | WBbiopr:00000001 | ||||||||
Map_info | Positive | Inside_rearr | nDf62 | ||||||
Positive_clone | C34E11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | Pos_neg_data | 10936 | |||||||
Interpolated_map_position | X | 6.72588 | |||||||
Reference | WBPaper00005825 | ||||||||
WBPaper00024441 | |||||||||
WBPaper00031335 | |||||||||
WBPaper00035664 | |||||||||
WBPaper00037855 | |||||||||
WBPaper00039808 | |||||||||
WBPaper00039813 | |||||||||
WBPaper00054944 | |||||||||
WBPaper00066207 | |||||||||
Method | Gene |