WormBase Tree Display for Gene: WBGene00003291
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| WBGene00003291 | Evidence | Paper_evidence | WBPaper00004928 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C16H3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-63 | Person_evidence | WBPerson18 | |||||
| Sequence_name | C16H3.5 | ||||||||
| Molecular_name | C16H3.5 | ||||||||
| C16H3.5a | |||||||||
| C16H3.5b | |||||||||
| Other_name | cel-mir-63 | Remark | miRBase V21 import | ||||||
| MirGeneDB 2.1 import | |||||||||
| CELE_C16H3.5 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-63 | ||||||||
| DB_info | Database | miRBase | acc | MI0000034 | |||||
| SignaLink | mirna | cel-mir-63 | |||||||
| MirGeneDB | cel | Cel-Mir-63 | |||||||
| NDB | locus_tag | CELE_C16H3.5 | |||||||
| NCBI | gene | 259864 | |||||||
| RefSeq | protein | NR_001262.2 | |||||||
| RNAcentral | URSid | URS0000161CFE | |||||||
| URS00001DEF01 | |||||||||
| URS00007819CF | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar00090865 | Inferred_automatically | From strain object: MT18016 | ||||||
| From strain object: VT1289 | |||||||||
| WBVar01499519 | |||||||||
| WBVar01499710 | |||||||||
| WBVar01498805 | |||||||||
| WBVar00531580 | |||||||||
| WBVar02122067 | |||||||||
| WBVar02122068 | |||||||||
| WBVar01500067 | |||||||||
| Strain | WBStrain00027585 | ||||||||
| WBStrain00040236 | |||||||||
| In_cluster | MIR-63 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-63 encodes a microRNA (miRNA), a small noncoding RNA that is likely involved in post-transcriptional regulation of gene expression; miR-63 is expressed at high levels during all developmental stages and in glp-4 mutant hermaphrodites lacking a germline; miR-63 is also detected in him-8 mutants and dauer larvae; miR-63 does not appear to have orthologs in other species, and the targets of miR-63 are not yet known. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00005825 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Expressed in neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | C16H3.5 | |||||||
| C16H3.5a | |||||||||
| C16H3.5b | |||||||||
| Associated_feature | WBsf979139 | ||||||||
| Experimental_info | Expr_pattern | Expr2490 | |||||||
| Expr8465 | |||||||||
| Expr10912 | |||||||||
| Expr15763 | |||||||||
| Drives_construct | WBCnstr00005502 | ||||||||
| WBCnstr00016907 | |||||||||
| Expression_cluster (30) | |||||||||
| Interaction (15) | |||||||||
| Map_info | Map | X | Position | 24.4365 | Error | 0.040415 | |||
| Positive | Positive_clone | C16H3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00005825 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00032187 | |||||||||
| WBPaper00032188 | |||||||||
| WBPaper00032329 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00058668 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
