WormBase Tree Display for Gene: WBGene00003087
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WBGene00003087 | Evidence | Person_evidence | WBPerson260 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F49H12 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | lsy-2 | Person_evidence | WBPerson260 | |||||
Sequence_name | F49H12.1 | ||||||||
Molecular_name | F49H12.1a | ||||||||
F49H12.1a.1 | |||||||||
CE28437 | |||||||||
F49H12.1b | |||||||||
CE38521 | |||||||||
F49H12.1b.1 | |||||||||
Other_name | CELE_F49H12.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | lsy-2 | ||||||||
DB_info | Database | WormQTL | gene | WBGene00003087 | |||||
SignaLink | protein | WBGene00003087 | |||||||
WormFlux | gene | WBGene00003087 | |||||||
NDB | locus_tag | CELE_F49H12.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00003087|UniProtKB=Q9N5S3 | |||||||
family | PTHR24404 | ||||||||
NCBI | gene | 180522 | |||||||
RefSeq | protein | NM_001029525.5 | |||||||
NM_001029526.4 | |||||||||
SwissProt | UniProtAcc | Q9N5S3 | |||||||
TREEFAM | TREEFAM_ID | TF315770 | |||||||
UniProt_GCRP | UniProtAcc | Q9N5S3 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lsy | ||||||||
Allele (61) | |||||||||
Strain | WBStrain00029358 | ||||||||
WBStrain00029562 | |||||||||
WBStrain00034790 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00095591 | ||||||||
00095592 | |||||||||
00095593 | |||||||||
00095594 | |||||||||
00095595 | |||||||||
00095596 | |||||||||
00095597 | |||||||||
00095598 | |||||||||
Ortholog (16) | |||||||||
Paralog (17) | |||||||||
Structured_description | Concise_description | lsy-2 encodes a novel C2H2 zinc-finger transcription factor that is most closely related to other nematode zinc-finger proteins; during development, lsy-2 is required for the left-right asymmetry of the ASE neurons; specifically, lsy-2 is required in ASEL for regulating the expression of the lsy-6 miRNA that controls the asymmetric expression of guanylyl cyclase chemoreceptors; a LSY-2::GFP reporter fusion is expressed ubiquitously from the 50-cell stage of embryogenesis through adulthood with expression seen in both ASEL and ASER; expression is localized to moving nuclear punctae. | Paper_evidence | WBPaper00027031 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 16 May 2007 00:00:00 | ||||||||
Automated_description | Predicted to enable metal ion binding activity. Involved in nematode larval development; neuron fate specification; and positive regulation of gene expression. Located in nucleus. Expressed in several structures, including ASE; head muscle; head neurons; intestine; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F49H12.1a | |||||||
F49H12.1b | |||||||||
Corresponding_CDS_history | F49H12.1:wp142 | ||||||||
Corresponding_transcript | F49H12.1a.1 | ||||||||
F49H12.1b.1 | |||||||||
Other_sequence (25) | |||||||||
Associated_feature (15) | |||||||||
Gene_product_binds (376) | |||||||||
Transcription_factor | WBTranscriptionFactor000186 | ||||||||
Experimental_info | RNAi_result (17) | ||||||||
Expr_pattern | Expr3799 | ||||||||
Expr7577 | |||||||||
Expr13098 | |||||||||
Expr1020695 | |||||||||
Expr1031462 | |||||||||
Expr1151716 | |||||||||
Expr1200126 | |||||||||
Expr1200360 | |||||||||
Expr2013305 | |||||||||
Expr2031536 | |||||||||
Drives_construct (12) | |||||||||
Construct_product | WBCnstr00016729 | ||||||||
WBCnstr00016772 | |||||||||
WBCnstr00018899 | |||||||||
WBCnstr00036240 | |||||||||
Microarray_results (33) | |||||||||
Expression_cluster (119) | |||||||||
Interaction (99) | |||||||||
Map_info | Map | X | Position | -17.0549 | Error | 0.011911 | |||
Positive | Positive_clone | F49H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4371 | |||||||
5027 | |||||||||
Pseudo_map_position | |||||||||
Reference (16) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |