WormBase Tree Display for Gene: WBGene00003038
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WBGene00003038 | SMap | S_parent | Sequence | ZK673 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lin-56 | Paper_evidence | WBPaper00037906 | |||
Person_evidence | WBPerson261 | ||||||
Sequence_name | ZK673.3 | ||||||
Molecular_name (3) | |||||||
Other_name | CELE_ZK673.3 | Accession_evidence | NDB | BX284602 | |||
Public_name | lin-56 | ||||||
DB_info | Database | AceView | gene | 2K741 | |||
WormFlux | gene | WBGene00003038 | |||||
NDB | locus_tag | CELE_ZK673.3 | |||||
NCBI | gene | 174609 | |||||
RefSeq | protein | NM_063845.5 | |||||
SwissProt | UniProtAcc | Q09377 | |||||
TREEFAM | TREEFAM_ID | TF343895 | |||||
UniProt_GCRP | UniProtAcc | Q09377 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lin | ||||||
Allele (36) | |||||||
Strain | WBStrain00027347 | ||||||
WBStrain00027402 | |||||||
WBStrain00027406 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00053610 | ||||||
00053611 | |||||||
00053612 | |||||||
00053613 | |||||||
00053614 | |||||||
00053615 | |||||||
00053616 | |||||||
00053617 | |||||||
00053618 | |||||||
Contained_in_operon | CEOP2488 | ||||||
Ortholog | WBGene00053373 | Caenorhabditis remanei | From_analysis | TreeFam | |||
WBGene00158352 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||
WormBase-Compara | |||||||
CSP29.g17361 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||
CSP32.g5686 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||
CSP39.g11553 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||
CSP39.g6649 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||
CSP40.g16071 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||
Csp5_scaffold_00141.g5463 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||
chrII_pilon.g5730 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Paralog | WBGene00014060 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Structured_description | Concise_description | lin-56 encodes a novel protein that contains a THAP zinc-finger-like domain; lin-56, along with lin-15A, which also encodes a THAP domain-containing protein, functions as a transcriptional regulator to negatively regulate expression of LIN-3/EGF and, in turn, Ras-mediated vulval development; LIN-56 is expressed ubiquitously in somatic cells from embryogenesis through adulthood and localizes to nuclei; LIN-56 and LIN-15A physically interact in a yeast two-hybrid assay and are mutually required for normal patterns of expression. | Paper_evidence | WBPaper00005861 | |||
WBPaper00026688 | |||||||
WBPaper00037906 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 21 Mar 2011 00:00:00 | ||||||
Automated_description | Involved in several processes, including protein localization to nucleus; protein stabilization; and vulval development. Located in nucleus. Expressed in somatic cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK673.3 | |||||
Corresponding_transcript | ZK673.3.1 | ||||||
Other_sequence | CBC01728_1 | ||||||
Associated_feature | WBsf644610 | ||||||
WBsf222016 | |||||||
Experimental_info | RNAi_result | WBRNAi00059644 | Inferred_automatically | RNAi_primary | |||
WBRNAi00061657 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00000884 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038411 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00062497 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9238 | ||||||
Expr1031424 | |||||||
Expr1163054 | |||||||
Expr2013194 | |||||||
Expr2031426 | |||||||
Drives_construct | WBCnstr00036268 | ||||||
Construct_product | WBCnstr00036268 | ||||||
Antibody | WBAntibody00001245 | ||||||
WBAntibody00002218 | |||||||
Microarray_results (20) | |||||||
Expression_cluster (100) | |||||||
Interaction (19) | |||||||
Map_info | Map | II | Position | 2.57334 | Error | 0.00813 | |
Positive | Positive_clone | ZK673 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4103 | |||||
4123 | |||||||
4124 | |||||||
Reference (20) | |||||||
Method | Gene |