WormBase Tree Display for Gene: WBGene00002241
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WBGene00002241 | SMap | S_parent | Sequence | F10C2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | kup | ||||||
Allele (99) | |||||||
Legacy_information | [C.elegansII] NMK. Upstream in operon with kin-13. Encodes predicted 385 aa novel protein. Antibody stains nuclei of most cells. [Zorio et al. 1994; CR] | ||||||
Strain | WBStrain00035751 | ||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP5312 | ||||||
Ortholog (27) | |||||||
Structured_description | Concise_description | kup-1 encodes a novel protein that is conserved in C. briggsae, but contains no other known homologs; kup-1 is the upstream gene in an operon with pkc-1, which encodes two protein kinase C isoforms of the nPKC isotype; the polycistronic kup-1/pkc-1 mRNA is detected at low levels in embryos and larvae, but its expression greatly increases in adults; as loss of kup-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kup-1 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00001950 | |||
WBPaper00005493 | |||||||
WBPaper00005654 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in several structures, including AVK; MSaapaapa; accessory cell; anterior arcade cell; and g2 based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; glp-1; and gld-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including rotenone; mianserin; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F10C2.2 | |||||
Corresponding_transcript | F10C2.2.1 | ||||||
Other_sequence (42) | |||||||
Associated_feature (30) | |||||||
Experimental_info | RNAi_result | WBRNAi00044221 | Inferred_automatically | RNAi_primary | |||
WBRNAi00013038 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00085043 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12857 | ||||||
Expr1021564 | |||||||
Expr1031316 | |||||||
Expr1148182 | |||||||
Expr2012983 | |||||||
Expr2031215 | |||||||
Drives_construct | WBCnstr00022908 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (139) | |||||||
Interaction | WBInteraction000227835 | ||||||
WBInteraction000396019 | |||||||
WBInteraction000435475 | |||||||
WBInteraction000574965 | |||||||
WBInteraction000576308 | |||||||
Map_info | Map | V | Position | 3.60848 | Error | 0.003861 | |
Positive | Positive_clone | F10C2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point (2) | ||||||
Pseudo_map_position | |||||||
Reference | WBPaper00001723 | ||||||
WBPaper00002006 | |||||||
WBPaper00005493 | |||||||
WBPaper00010944 | |||||||
WBPaper00015440 | |||||||
WBPaper00022096 | |||||||
WBPaper00031335 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |