WormBase Tree Display for Gene: WBGene00002056
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WBGene00002056 | SMap | S_parent | Sequence | CHROMOSOME_X | |||
---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||
Name | CGC_name | ifc-2 | Person_evidence | WBPerson105 | |||
WBPerson293 | |||||||
WBPerson260 | |||||||
Sequence_name | M6.1 | ||||||
Molecular_name (19) | |||||||
Other_name | Cel IF C2 | Accession_evidence | X70832 | ||||
CelIF c2 | |||||||
ecp-1 | Paper_evidence | WBPaper00057164 | |||||
exc-2 | Person_evidence | WBPerson260 | |||||
Curator_confirmed | WBPerson51134 | ||||||
Date_last_updated | 07 Aug 2023 16:20:23 | ||||||
CELE_M6.1 | Accession_evidence | NDB | BX284606 | ||||
Public_name | ifc-2 | ||||||
DB_info | Database (12) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (4) | ||||||
Acquires_merge | WBGene00001363 | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ifc | ||||||
Allele (153) | |||||||
Legacy_information | [Buechner M] exc for excretory canal defect. Canals are very short and consist of a series of vacuoles. 100% penetrant. Usually visible by low-power microscopy. | ||||||
[C.elegansII] rh90 : excretory canal defect. Canals are very short and consist of a series of vacuoles. Luminal coat partly detached, floats in canal.100% penetrant.Usually visible by low-power microscopy. Affects tail spike ??? OA1: rh105. [NJ] | |||||||
Strain | WBStrain00002850 | ||||||
WBStrain00028840 | |||||||
WBStrain00047374 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (17) | |||||||
Ortholog (61) | |||||||
Paralog (12) | |||||||
Structured_description | Concise_description | ifc-2 encodes three isoforms of an intermediate filament protein dispensable for viability but required for normal movement, growth rate, body size, body shape, and cuticle strength; IFC-2 is present in the cytoplasm of intestinal cells, and at the desmosomes of intestinal and pharyngeal cells. | Paper_evidence | WBPaper00001981 | |||
WBPaper00004761 | |||||||
WBPaper00005492 | |||||||
WBPaper00006137 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to be a structural constituent of cytoskeleton. Involved in post-embryonic digestive tract morphogenesis. Located in cytoplasm and desmosome. Expressed in several structures, including excretory canal; pharyngeal-intestinal valve; pharynx; rectal valve cell; and uterus. Human ortholog(s) of this gene implicated in several diseases, including Dowling-Degos disease; ichthyosis (multiple); and palmoplantar keratosis (multiple). Is an ortholog of several human genes including KRT1 (keratin 1); KRT2 (keratin 2); and KRT3 (keratin 3). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model (14) | ||||||
Molecular_info | Corresponding_CDS (6) | ||||||
Corresponding_CDS_history | M6.1a:wp272 | ||||||
M6.1b:wp272 | |||||||
M6.1c:wp272 | |||||||
Corresponding_transcript | M6.1a.1 | ||||||
M6.1a.2 | |||||||
M6.1b.1 | |||||||
M6.1c.1 | |||||||
M6.1d.1 | |||||||
M6.1e.1 | |||||||
M6.1f.1 | |||||||
Other_sequence | CR07924 | ||||||
FD516689.1 | |||||||
CBC09732_1 | |||||||
CJC02211_1 | |||||||
CBC03886_1 | |||||||
CSC00034_1 | |||||||
CRC05750_1 | |||||||
Associated_feature (13) | |||||||
Experimental_info | RNAi_result (27) | ||||||
Expr_pattern (17) | |||||||
Drives_construct | WBCnstr00003372 | ||||||
WBCnstr00036488 | |||||||
WBCnstr00042147 | |||||||
WBCnstr00042148 | |||||||
WBCnstr00042149 | |||||||
Construct_product | WBCnstr00036488 | ||||||
WBCnstr00042019 | |||||||
WBCnstr00042020 | |||||||
WBCnstr00042147 | |||||||
Antibody | WBAntibody00000563 | ||||||
WBAntibody00002893 | |||||||
WBAntibody00002913 | |||||||
Microarray_results (39) | |||||||
Expression_cluster (285) | |||||||
Interaction (77) | |||||||
Map_info | Map | X | Position | -19.5186 | Error | 0.005743 | |
Positive | Positive_clone | M6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4971 | |||||
Pseudo_map_position | |||||||
Reference (41) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |