WormBase Tree Display for Gene: WBGene00002032
expand all nodes | collapse all nodes | view schema
| WBGene00002032 | Evidence | Person_evidence | WBPerson715 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| CGC_data_submission | |||||||||
| SMap | S_parent | Sequence | F41H10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | htp-1 | Person_evidence | WBPerson715 | |||||
| Sequence_name | F41H10.10 | ||||||||
| Molecular_name | F41H10.10 | ||||||||
| F41H10.10.1 | |||||||||
| CE31692 | |||||||||
| Other_name | tag-35 | CGC_data_submission | |||||||
| CELE_F41H10.10 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | htp-1 | ||||||||
| DB_info | Database | AceView | gene | 4G156 | |||||
| WormQTL | gene | WBGene00002032 | |||||||
| WormFlux | gene | WBGene00002032 | |||||||
| NDB | locus_tag | CELE_F41H10.10 | |||||||
| NCBI | gene | 259571 | |||||||
| RefSeq | protein | NM_068398.5 | |||||||
| TREEFAM | TREEFAM_ID | TF313989 | |||||||
| TrEMBL | UniProtAcc | Q20305 | |||||||
| UniProt_GCRP | UniProtAcc | Q20305 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | htp | ||||||||
| Allele (28) | |||||||||
| Strain | WBStrain00035622 | ||||||||
| WBStrain00035701 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00067763 | ||||||||
| 00067764 | |||||||||
| Ortholog (53) | |||||||||
| Paralog | WBGene00002033 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001862 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | htp-1 encodes a HORMA domain-containing protein that, along with HTP-2 and HTP-3 is one of three HIM-3 paralogs encodes by the C. elegans genome; during meiosis, HTP-1 functions to regulate the association of synaptonemal complex proteins with properly aligned homologous chromosomes, thus ensuring productive recombination events, chiasma formation, and meiotic chromosome segregation. | Paper_evidence | WBPaper00031675 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Mar 2009 00:00:00 | ||||||||
| Automated_description | Involved in regulation of centriole-centriole cohesion. Located in lateral element. Expressed in Z2 and Z3. Is an ortholog of human HORMAD1 (HORMA domain containing 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F41H10.10 | |||||||
| Corresponding_CDS_history | F41H10.10:wp83 | ||||||||
| Corresponding_transcript | F41H10.10.1 | ||||||||
| Other_sequence | CRC00588_1 | ||||||||
| CR05966 | |||||||||
| CBC00466_1 | |||||||||
| CBC08900_1 | |||||||||
| CR09321 | |||||||||
| CJC04370_1 | |||||||||
| CRC12289_1 | |||||||||
| Associated_feature | WBsf230084 | ||||||||
| WBsf230085 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr14396 | ||||||||
| Expr15931 | |||||||||
| Expr1024262 | |||||||||
| Expr1031187 | |||||||||
| Expr1150903 | |||||||||
| Expr2012639 | |||||||||
| Expr2030875 | |||||||||
| Drives_construct | WBCnstr00006075 | ||||||||
| WBCnstr00036508 | |||||||||
| WBCnstr00040836 | |||||||||
| Construct_product | WBCnstr00006064 | ||||||||
| WBCnstr00006075 | |||||||||
| WBCnstr00036508 | |||||||||
| WBCnstr00040836 | |||||||||
| Antibody | WBAntibody00001878 | ||||||||
| WBAntibody00002688 | |||||||||
| WBAntibody00002807 | |||||||||
| WBAntibody00002924 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction (265) | |||||||||
| Map_info | Map | IV | Position | 1.64749 | Error | 0.003807 | |||
| Positive | Positive_clone | F41H10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4423 | |||||||
| 4282 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (45) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
