WormBase Tree Display for Gene: WBGene00002016
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WBGene00002016 | SMap | S_parent | Sequence | Y46H3A | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hsp | ||||||
Allele (16) | |||||||
Strain (36) | |||||||
In_cluster | HSP16B | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00038912 | ||||||
00038913 | |||||||
00038914 | |||||||
00038915 | |||||||
00038916 | |||||||
00038917 | |||||||
00038918 | |||||||
00038919 | |||||||
00038920 | |||||||
00105435 | |||||||
Ortholog (92) | |||||||
Paralog (17) | |||||||
Structured_description | Concise_description | hsp-16.2 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins; hsp-16.2 expression, strongest in intestine and pharynx, is induced in response to heat shock or other environmental stresses; HSP-16.2 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease; HSP-16.2 is likely to function as a passive ligand temporarily preventing unfolded proteins from aggregating. | Paper_evidence | WBPaper00001187 | |||
WBPaper00001497 | |||||||
WBPaper00002665 | |||||||
WBPaper00003787 | |||||||
WBPaper00004424 | |||||||
WBPaper00005371 | |||||||
WBPaper00013029 | |||||||
WBPaper00013239 | |||||||
WBPaper00013280 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 05 Nov 2004 00:00:00 | ||||||
Automated_description | Predicted to enable unfolded protein binding activity. Involved in response to heat. Located in cytoplasm. Expressed in several structures, including coelomocyte; enteric muscle; gonad; somatic nervous system; and spermatid. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y46H3A.3a | |||||
Y46H3A.3b | |||||||
Corresponding_transcript | Y46H3A.3a.1 | ||||||
Y46H3A.3b.1 | |||||||
Other_sequence (86) | |||||||
Associated_feature | WBsf652481 | ||||||
WBsf652482 | |||||||
WBsf919559 | |||||||
WBsf919560 | |||||||
WBsf919561 | |||||||
WBsf919562 | |||||||
WBsf233356 | |||||||
WBsf233357 | |||||||
WBsf233358 | |||||||
Experimental_info | RNAi_result | WBRNAi00020672 | Inferred_automatically | RNAi_primary | |||
WBRNAi00027604 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076795 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063187 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113926 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00063652 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056700 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00070128 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00106382 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113923 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (12) | |||||||
Drives_construct (233) | |||||||
Construct_product | WBCnstr00004969 | ||||||
WBCnstr00010254 | |||||||
WBCnstr00021901 | |||||||
WBCnstr00036520 | |||||||
WBCnstr00042208 | |||||||
Antibody | WBAntibody00000050 | ||||||
WBAntibody00001324 | |||||||
WBAntibody00001797 | |||||||
WBAntibody00001844 | |||||||
WBAntibody00001859 | |||||||
Microarray_results (16) | |||||||
Expression_cluster (393) | |||||||
Interaction (315) | |||||||
WBProcess | WBbiopr:00000050 | ||||||
Map_info | Map | V | Position | -17.5804 | Error | 0.043798 | |
Positive | Positive_clone | Y46H3A | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4418 | |||||
5335 | |||||||
Pseudo_map_position | |||||||
Reference (244) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |