WormBase Tree Display for Gene: WBGene00001990
expand all nodes | collapse all nodes | view schema
WBGene00001990 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K07A12 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hot | ||||||
Allele (41) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00013512 | ||||||
00013513 | |||||||
00013514 | |||||||
00013515 | |||||||
Ortholog (23) | |||||||
Paralog (7) | |||||||
Structured_description | Concise_description | hot-5 encodes a predicted membrane-associated protein that is a member of the Ly-6 superfamily of glycosylphosphatidylinositol (GPI)-linked signaling proteins and is homologous to ODR-2, a neuronally expressed protein required for olfaction; as loss of hot-5 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of HOT-5 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00004498 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to be involved in olfactory behavior and response to odorant. Predicted to be located in axon and neuronal cell body. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K07A12.6 | |||||
Corresponding_transcript | K07A12.6.1 | ||||||
Other_sequence | AF324057 | ||||||
JI176669.1 | |||||||
Associated_feature | WBsf649406 | ||||||
WBsf664589 | |||||||
WBsf664590 | |||||||
Experimental_info | RNAi_result | WBRNAi00003951 | Inferred_automatically | RNAi_primary | |||
WBRNAi00050101 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033411 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1020399 | ||||||
Expr1153802 | |||||||
Expr2012543 | |||||||
Expr2030782 | |||||||
Drives_construct | WBCnstr00036536 | ||||||
Construct_product | WBCnstr00036536 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (153) | |||||||
Interaction (16) | |||||||
Map_info | Map | I | Position | 3.01746 | Error | 8.8e-05 | |
Positive | Positive_clone | K07A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00004498 | ||||||
Remark | Sequence connection from [Chou JH, Bargmann CI, Sengupta P] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |