WormBase Tree Display for Gene: WBGene00001955
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WBGene00001955 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F58A4 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | hlh | ||||||
Allele (90) | |||||||
Strain | WBStrain00032859 | ||||||
WBStrain00030583 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00042552 | ||||||
00042553 | |||||||
00042554 | |||||||
00042555 | |||||||
00042556 | |||||||
00042557 | |||||||
00042558 | |||||||
00109807 | |||||||
Ortholog (29) | |||||||
Paralog | WBGene00003510 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00003378 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including excretory cell; intestinal cell; male-specific anatomical entity; non-striated muscle; and somatic nervous system. Is an ortholog of human TFAP4 (transcription factor AP-4). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F58A4.7a | |||||
F58A4.7b | |||||||
F58A4.7d | |||||||
Corresponding_CDS_history | F58A4.7a:wp88 | ||||||
F58A4.7b:wp88 | |||||||
F58A4.7c:wp275 | |||||||
Corresponding_transcript (8) | |||||||
Other_sequence (26) | |||||||
Associated_feature (16) | |||||||
Transcription_factor | WBTranscriptionFactor000068 | ||||||
Experimental_info | RNAi_result | WBRNAi00106987 | Inferred_automatically | RNAi_primary | |||
WBRNAi00048934 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00115659 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033064 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015934 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00005984 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001428 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00087728 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12824 | ||||||
Expr15663 | |||||||
Expr15976 | |||||||
Expr1012609 | |||||||
Expr1031137 | |||||||
Expr1152672 | |||||||
Expr1200145 | |||||||
Expr2012491 | |||||||
Expr2030730 | |||||||
Drives_construct | WBCnstr00016793 | ||||||
WBCnstr00018615 | |||||||
WBCnstr00022887 | |||||||
WBCnstr00022888 | |||||||
WBCnstr00036563 | |||||||
WBCnstr00042427 | |||||||
Construct_product | WBCnstr00016793 | ||||||
WBCnstr00016890 | |||||||
WBCnstr00017353 | |||||||
WBCnstr00022888 | |||||||
WBCnstr00036563 | |||||||
WBCnstr00042427 | |||||||
Regulate_expr_cluster | WBPaper00060683:hlh-11(ko1)_downregulated | ||||||
WBPaper00060683:hlh-11(ko1)_upregulated | |||||||
WBPaper00060683:hlh-11(overexpression)_downregulated | |||||||
WBPaper00060683:hlh-11(overexpression)_upregulated | |||||||
Microarray_results (40) | |||||||
Expression_cluster (206) | |||||||
Interaction (14) | |||||||
Map_info | Map | III | Position | 0.788189 | Error | 0.007563 | |
Positive | Positive_clone | F58A4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (12) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |