WormBase Tree Display for Gene: WBGene00001934
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| WBGene00001934 | SMap | S_parent | Sequence | F55G1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | his-60 | Person_evidence | WBPerson160 | |||||
| Sequence_name | F55G1.11 | ||||||||
| Molecular_name | F55G1.11 | ||||||||
| F55G1.11.1 | |||||||||
| CE03252 | |||||||||
| Other_name | CELE_F55G1.11 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | his-60 | ||||||||
| DB_info | Database | AceView | gene | 4I252 | |||||
| WormQTL | gene | WBGene00001934 | |||||||
| WormFlux | gene | WBGene00001934 | |||||||
| NDB | locus_tag | CELE_F55G1.11 | |||||||
| NCBI | gene | 177522 | |||||||
| RefSeq | protein | NM_068802.7 | |||||||
| SwissProt | UniProtAcc | P62784 | |||||||
| UniProt_GCRP | UniProtAcc | P62784 | |||||||
| OMIM | gene | 602826 | |||||||
| 602827 | |||||||||
| 602830 | |||||||||
| 602833 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar00921624 | |||||||||
| WBVar00921625 | |||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar01499633 | |||||||||
| WBVar01500245 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00109745 | ||||||||
| 00109746 | |||||||||
| 00109747 | |||||||||
| Ortholog (90) | |||||||||
| Paralog (15) | |||||||||
| Structured_description | Concise_description | his-60 encodes an H4 histone; by homology, HIS-60 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-60 expression is detected in early embryos, beginning at the 28-cell stage and continuing through the comma stage (early morphogenesis); his-60 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. | Paper_evidence | WBPaper00005142 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Is an ortholog of several human genes including H4C1 (H4 clustered histone 1); H4C4 (H4 clustered histone 4); and H4C9 (H4 clustered histone 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | EFO:MONDO:0031400 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4785,HGNC:4787,HGNC:4790,HGNC:4793) | ||||
| Molecular_info | Corresponding_CDS | F55G1.11 | |||||||
| Corresponding_CDS_history | F55G1.11:wp156 | ||||||||
| Corresponding_transcript | F55G1.11.1 | ||||||||
| Other_sequence | Dviv_isotig21308 | ||||||||
| Dviv_isotig01858 | |||||||||
| PSC00797_1 | |||||||||
| GW409924.1 | |||||||||
| GR11649 | |||||||||
| MH03556 | |||||||||
| Associated_feature | WBsf651917 | ||||||||
| WBsf651918 | |||||||||
| WBsf655518 | |||||||||
| WBsf668030 | |||||||||
| WBsf668031 | |||||||||
| WBsf981783 | |||||||||
| WBsf230278 | |||||||||
| WBsf230279 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048534 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00108741 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108558 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108751 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00108633 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024358 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110771 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr116 | ||||||||
| Expr1031126 | |||||||||
| Expr1152321 | |||||||||
| Expr2012469 | |||||||||
| Expr2030708 | |||||||||
| Drives_construct | WBCnstr00036581 | ||||||||
| Construct_product | WBCnstr00036581 | ||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction (252) | |||||||||
| Map_info | Map | IV | Position | 3.33885 | |||||
| Positive | Positive_clone | F55G1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040135 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057312 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
