WormBase Tree Display for Gene: WBGene00001929
expand all nodes | collapse all nodes | view schema
| WBGene00001929 | SMap | S_parent | Sequence | F54E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | his-55 | Person_evidence | WBPerson160 | |||||
| Sequence_name | F54E12.1 | ||||||||
| Molecular_name | F54E12.1 | ||||||||
| F54E12.1.1 | |||||||||
| CE03253 | |||||||||
| Other_name | CELE_F54E12.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | his-55 | ||||||||
| DB_info | Database | AceView | gene | 4M102 | |||||
| WormQTL | gene | WBGene00001929 | |||||||
| WormFlux | gene | WBGene00001929 | |||||||
| NDB | locus_tag | CELE_F54E12.1 | |||||||
| NCBI | gene | 186250 | |||||||
| RefSeq | protein | NM_069737.3 | |||||||
| SwissProt | UniProtAcc | P08898 | |||||||
| UniProt_GCRP | UniProtAcc | P08898 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | his | ||||||||
| Allele | WBVar02154292 | ||||||||
| WBVar01500079 | |||||||||
| WBVar01498996 | |||||||||
| WBVar01499925 | |||||||||
| WBVar01498645 | |||||||||
| WBVar01499585 | |||||||||
| WBVar01499586 | |||||||||
| WBVar01499798 | |||||||||
| WBVar01500245 | |||||||||
| Strain | WBStrain00001928 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00109726 | ||||||||
| 00109727 | |||||||||
| 00109728 | |||||||||
| 00109729 | |||||||||
| Ortholog (145) | |||||||||
| Paralog (22) | |||||||||
| Structured_description | Concise_description | his-55 encodes an H3 histone; by homology, HIS-55 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-55 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. | Paper_evidence | WBPaper00005142 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of several human genes including H3C1 (H3 clustered histone 1); H3C3 (H3 clustered histone 3); and H3C4 (H3 clustered histone 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54E12.1 | |||||||
| Corresponding_transcript | F54E12.1.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf997815 | ||||||||
| WBsf997816 | |||||||||
| WBsf1018196 | |||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Chronogram566 | ||||||||
| Expr1152129 | |||||||||
| Expr2012464 | |||||||||
| Expr2030702 | |||||||||
| Drives_construct | WBCnstr00002716 | ||||||||
| WBCnstr00036586 | |||||||||
| Construct_product | WBCnstr00021507 | ||||||||
| WBCnstr00036586 | |||||||||
| Microarray_results | SMD_F54E12.1 | ||||||||
| Aff_F54E12.1 | |||||||||
| Expression_cluster (58) | |||||||||
| Interaction (193) | |||||||||
| Map_info | Map | IV | Position | 4.96027 | |||||
| Positive | Positive_clone | F54E12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040135 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057312 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
