WormBase Tree Display for Gene: WBGene00001816
expand all nodes | collapse all nodes | view schema
| WBGene00001816 | SMap | S_parent | Sequence | Y48G8AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | haf-6 | Person_evidence | WBPerson36 | |||||
| Sequence_name | Y48G8AL.11 | ||||||||
| Molecular_name | Y48G8AL.11a | ||||||||
| Y48G8AL.11a.1 | |||||||||
| CE39850 | |||||||||
| Y48G8AL.11b | |||||||||
| CE49415 | |||||||||
| Y48G8AL.11c | |||||||||
| CE49154 | |||||||||
| Y48G8AL.11b.1 | |||||||||
| Y48G8AL.11c.1 | |||||||||
| Other_name | CELE_Y48G8AL.11 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | haf-6 | ||||||||
| DB_info | Database | AceView | gene | 1B636 | |||||
| WormQTL | gene | WBGene00001816 | |||||||
| WormFlux | gene | WBGene00001816 | |||||||
| NDB | locus_tag | CELE_Y48G8AL.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001816|UniProtKB=Q9BL17 | |||||||
| family | PTHR24221 | ||||||||
| NCBI | gene | 171694 | |||||||
| RefSeq | protein | NM_001306301.3 | |||||||
| NM_001306302.3 | |||||||||
| NM_058427.7 | |||||||||
| TrEMBL | UniProtAcc | V6CLQ7 | |||||||
| Q9BL17 | |||||||||
| V6CKC7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BL17 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | haf | ||||||||
| Allele (488) | |||||||||
| Strain | WBStrain00033045 | ||||||||
| WBStrain00055353 | |||||||||
| WBStrain00055356 | |||||||||
| In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (49) | |||||||||
| Paralog (23) | |||||||||
| Structured_description | Concise_description | haf-6 encodes a half-molecule ATP-binding cassette (ABC) transporter; haf-6 activity is required for efficient RNA interference (RNAi) of genes expressed in the germline and intestine; antibody staining reveals that HAF-6 is expressed in germline and intestinal tissues; in the intestine, HAF-6 colocalizes with an endoplasmic reticulum (ER) protein and in the germline, HAF-6 localization additionally extends to perinuclear regions, an observation also consistent with ER localization. | Paper_evidence | WBPaper00027644 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Located in perinuclear endoplasmic reticulum. Expressed in germ line; intestine; and muscle cell. Is an ortholog of human ABCB8 (ATP binding cassette subfamily B member 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G8AL.11a | |||||||
| Y48G8AL.11b | |||||||||
| Y48G8AL.11c | |||||||||
| Corresponding_CDS_history | Y48G8AL.11:wp154 | ||||||||
| Corresponding_transcript | Y48G8AL.11a.1 | ||||||||
| Y48G8AL.11b.1 | |||||||||
| Y48G8AL.11c.1 | |||||||||
| Other_sequence (32) | |||||||||
| Associated_feature | WBsf648932 | ||||||||
| WBsf663908 | |||||||||
| WBsf663909 | |||||||||
| WBsf663910 | |||||||||
| WBsf218960 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056962 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116497 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3351 | ||||||||
| Expr3352 | |||||||||
| Expr4794 | |||||||||
| Expr4795 | |||||||||
| Expr1020032 | |||||||||
| Expr1031065 | |||||||||
| Expr1160411 | |||||||||
| Expr2012359 | |||||||||
| Expr2030595 | |||||||||
| Drives_construct | WBCnstr00011348 | ||||||||
| WBCnstr00011349 | |||||||||
| WBCnstr00012250 | |||||||||
| Construct_product | WBCnstr00012250 | ||||||||
| Antibody | WBAntibody00001096 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (191) | |||||||||
| Interaction (23) | |||||||||
| Map_info | Map | I | Position | -16.922 | Error | 0.003346 | |||
| Positive | Positive_clone | Y48G8AL | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Sequence connection from Sheps JA and Baillie DL [021008 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
