WormBase Tree Display for Gene: WBGene00001585
expand all nodes | collapse all nodes | view schema
WBGene00001585 | SMap | S_parent | Sequence | M04B2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gfl | ||||||
Allele (18) | |||||||
Strain (2) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Ortholog (42) | |||||||
Paralog | WBGene00013692 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | gfl-1 encodes an ortholog of human GLIOMA-AMPLIFIED SEQUENCE-41 (GAS41; OMIM:602116, found in increased copy number in low-grade glioma); loss of GLF-1, which is predicted to associate with chromatin, results in potent suppression of the RNA interference (RNAi) mechanism; GLF-1 is also similar to the transcription factors (yeast and human) AF-9 and human ENL, and thus may represent a novel class of transcription factors. | Paper_evidence | WBPaper00005193 | |||
WBPaper00013026 | |||||||
WBPaper00013597 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson1823 | |||||||
WBPerson567 | |||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable chromatin binding activity and histone binding activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Is an ortholog of human YEATS4 (YEATS domain containing 4). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | M04B2.3 | |||||
Corresponding_transcript | M04B2.3.1 | ||||||
Other_sequence (25) | |||||||
Associated_feature | WBsf646382 | ||||||
WBsf646383 | |||||||
WBsf976976 | |||||||
WBsf976977 | |||||||
WBsf997859 | |||||||
WBsf997860 | |||||||
WBsf1018216 | |||||||
WBsf229164 | |||||||
Transcription_factor | WBTranscriptionFactor000174 | ||||||
Experimental_info | RNAi_result (25) | ||||||
Expr_pattern | Expr1022473 | ||||||
Expr1030951 | |||||||
Expr1154583 | |||||||
Expr2012030 | |||||||
Expr2030266 | |||||||
Drives_construct | WBCnstr00036844 | ||||||
Construct_product | WBCnstr00036844 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (122) | |||||||
Interaction (87) | |||||||
Map_info | Map | IV | Position | 4.99219 | Error | 0.001448 | |
Positive | Positive_clone | M04B2 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4863 | |||||
4832 | |||||||
4487 | |||||||
5044 | |||||||
Pseudo_map_position | |||||||
Reference (14) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |