WormBase Tree Display for Gene: WBGene00001558
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| WBGene00001558 | SMap | S_parent | Sequence | Y57G11C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gdi-1 | Person_evidence | WBPerson269 | |||||
| Sequence_name | Y57G11C.10 | ||||||||
| Molecular_name | Y57G11C.10a | ||||||||
| Y57G11C.10a.1 | |||||||||
| CE14944 | |||||||||
| Y57G11C.10b | |||||||||
| CE39445 | |||||||||
| Y57G11C.10c | |||||||||
| CE45747 | |||||||||
| Y57G11C.10b.1 | |||||||||
| Y57G11C.10c.1 | |||||||||
| Other_name | CELE_Y57G11C.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | gdi-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00001558 | |||||
| WormFlux | gene | WBGene00001558 | |||||||
| NDB | locus_tag | CELE_Y57G11C.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001558|UniProtKB=Q2V4S2 | |||||||
| family | PTHR11787 | ||||||||
| NCBI | gene | 178402 | |||||||
| RefSeq | protein | NM_001268907.3 | |||||||
| NM_001047579.7 | |||||||||
| NM_001047578.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF300449 | |||||||
| TrEMBL | UniProtAcc | G5EBR1 | |||||||
| E9P8A8 | |||||||||
| Q2V4S2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q2V4S2 | |||||||
| OMIM | gene | 300104 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gdi | ||||||||
| Allele (35) | |||||||||
| Legacy_information | [Hosono R] NMK. Encodes predicted 444aa polypeptide, 50 kDa band detected by antibody, high sequence similarity to mammalian RabGDI. 1.7 kb transcript, detected in embryo and adult, around pharynx, vulva, tail region. Predicted gene Y57G11C.10 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00008494 | ||||||||
| 00008495 | |||||||||
| 00008496 | |||||||||
| 00008497 | |||||||||
| 00008498 | |||||||||
| 00008499 | |||||||||
| 00109016 | |||||||||
| 00109017 | |||||||||
| 00109018 | |||||||||
| 00109019 | |||||||||
| Contained_in_operon | CEOP4580 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00022051 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gdi-1 encodes a member of the Rab GDP dissociation inhibitor (GDI) family with high similarity to Drosophila Gdi; expressed around the pharyngeal, vulval, and tail regions. | Paper_evidence | WBPaper00022835 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Down syndrome; non-syndromic X-linked intellectual disability 41; and psychotic disorder. Is an ortholog of human GDI1 (GDP dissociation inhibitor 1) and GDI2 (GDP dissociation inhibitor 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112058 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4226) | ||||
| DOID:0050776 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4226) | ||||||
| DOID:2468 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4226) | ||||||
| DOID:14250 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4227) | ||||||
| Molecular_info | Corresponding_CDS | Y57G11C.10a | |||||||
| Y57G11C.10b | |||||||||
| Y57G11C.10c | |||||||||
| Corresponding_transcript | Y57G11C.10a.1 | ||||||||
| Y57G11C.10b.1 | |||||||||
| Y57G11C.10c.1 | |||||||||
| Other_sequence (139) | |||||||||
| Associated_feature | WBsf668524 | ||||||||
| WBsf668525 | |||||||||
| WBsf998637 | |||||||||
| WBsf998638 | |||||||||
| WBsf1018694 | |||||||||
| WBsf1018695 | |||||||||
| WBsf1018696 | |||||||||
| WBsf231222 | |||||||||
| WBsf231223 | |||||||||
| WBsf231224 | |||||||||
| Experimental_info | RNAi_result (38) | ||||||||
| Expr_pattern | Expr12694 | ||||||||
| Expr12695 | |||||||||
| Expr15737 | |||||||||
| Expr1016291 | |||||||||
| Expr1030928 | |||||||||
| Expr1161090 | |||||||||
| Expr2012007 | |||||||||
| Expr2030243 | |||||||||
| Drives_construct | WBCnstr00022653 | ||||||||
| WBCnstr00036862 | |||||||||
| WBCnstr00042499 | |||||||||
| Construct_product | WBCnstr00022654 | ||||||||
| WBCnstr00036862 | |||||||||
| WBCnstr00042499 | |||||||||
| WBCnstr00042500 | |||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (125) | |||||||||
| Interaction (164) | |||||||||
| Map_info | Map | IV | Position | 12.4494 | Error | 0.012017 | |||
| Positive | Positive_clone | Y57G11C | Person_evidence | WBPerson269 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4235 | |||||||
| 4393 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
