WormBase Tree Display for Gene: WBGene00001154
expand all nodes | collapse all nodes | view schema
| WBGene00001154 | Evidence | Person_evidence | WBPerson3205 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Author_evidence | Van Gilst M | ||||||||
| SMap | S_parent | Sequence | F56B3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ech-5 | |||||||
| Sequence_name | F56B3.5 | ||||||||
| Molecular_name | F56B3.5 | ||||||||
| F56B3.5.1 | |||||||||
| CE46392 | |||||||||
| Other_name | CELE_F56B3.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ech-5 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ech | ||||||||
| Allele (56) | |||||||||
| Strain | WBStrain00001181 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033887 | ||||||||
| 00033888 | |||||||||
| 00033889 | |||||||||
| Contained_in_operon | CEOP4040 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00001155 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016325 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001156 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001151 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001152 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007130 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017301 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019022 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021296 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to be involved in fatty acid beta-oxidation. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 1 and renal tubular transport disease. Is an ortholog of human AUH (AU RNA binding methylglutaconyl-CoA hydratase) and ECHDC2 (enoyl-CoA hydratase domain containing 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110002 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:890) | ||||
| DOID:447 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:890) | ||||||
| Molecular_info | Corresponding_CDS | F56B3.5 | |||||||
| Corresponding_CDS_history | F56B3.5:wp227 | ||||||||
| Corresponding_transcript | F56B3.5.1 | ||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf645771 | ||||||||
| WBsf227883 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00048636 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Chronogram1641 | ||||||||
| Expr6211 | |||||||||
| Expr1013162 | |||||||||
| Expr1030734 | |||||||||
| Expr1152402 | |||||||||
| Expr2011169 | |||||||||
| Expr2029405 | |||||||||
| Drives_construct | WBCnstr00002073 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (95) | |||||||||
| Interaction (44) | |||||||||
| Map_info | Map | IV | Position | -23.422 | Error | 0.017026 | |||
| Positive | Positive_clone | F56B3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029292 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
