WormBase Tree Display for Gene: WBGene00001091
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WBGene00001091 | SMap | S_parent | Sequence | C01B10 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name (5) | |||||||
DB_info | Database | AceView | gene | 4H380 | |||
WormQTL | gene | WBGene00001091 | |||||
NDB | locus_tag | CELE_C01B10.1 | |||||
NCBI | gene | 177426 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0000336 | |||||
Gene_class | drh | ||||||
Allele (99) | |||||||
Strain | WBStrain00031732 | ||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP4647 | ||||||
Ortholog | WBGene00027855 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||
Paralog | WBGene00001090 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||
Structured_description | Concise_description | drh-2 was identified, along with drh-1, as a gene that can encode a protein with similarity to DExH-box helicases; drh-2, however, is classified by WB as a pseudogene because it has two frameshifts, based on EST and RNASeq alignments; the first frameshift occurs in exon 4 and the second occurs in exon 8 of the current WB gene structure; drh-2 appears to be the first gene in an operon (CEOP4647) followed by drh-1 and nstp-2. | Paper_evidence | WBPaper00005368 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Feb 2014 00:00:00 | ||||||
Automated_description | Enriched in intestine; muscle cell; and neurons based on microarray and RNA-seq studies. Is affected by several genes including daf-2; glp-1; and rrf-3 based on proteomic; microarray; and RNA-seq studies. Is affected by twelve chemicals including rotenone; levamisole; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS_history | C01B10.1:wp92 | |||||
C01B10.1:wp183 | |||||||
Corresponding_pseudogene | C01B10.1 | ||||||
Other_sequence | JI175259.1 | ||||||
FG621043.1 | |||||||
Experimental_info | Expr_pattern | Expr3877 | |||||
Drives_construct | WBCnstr00011709 | ||||||
Microarray_results | SMD_C01B10.1 | ||||||
185299_s_at | |||||||
A_12_P135120 | |||||||
A_12_P135121 | |||||||
Aff_C01B10.1 | |||||||
GPL19516_CGZ0001567 | |||||||
GPL21109_C01B10.1 | |||||||
GPL8304_CE_WBGene00001091_A | |||||||
GPL8673_C01B10_1P00492 | |||||||
Expression_cluster (103) | |||||||
Interaction | WBInteraction000543336 | ||||||
WBInteraction000543408 | |||||||
Map_info | Map | IV | Position | 3.21701 | Error | 0.000976 | |
Positive | Positive_clone | C01B10 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4840 | |||||
4804 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00005368 | ||||||
WBPaper00024434 | |||||||
WBPaper00027057 | |||||||
WBPaper00031962 | |||||||
WBPaper00032883 | |||||||
WBPaper00035245 | |||||||
WBPaper00042632 | |||||||
WBPaper00044120 | |||||||
WBPaper00044196 | |||||||
WBPaper00046788 | |||||||
Remark | Sequence connection from [Tabara H, Siomi S, Mello CC], [krb 020710] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |