WormBase Tree Display for Gene: WBGene00000995
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| WBGene00000995 | SMap | S_parent | Sequence | C18D1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | die-1 | Person_evidence | WBPerson539 | |||||
| Sequence_name | C18D1.1 | ||||||||
| Molecular_name | C18D1.1a | ||||||||
| C18D1.1a.1 | |||||||||
| CE51263 | |||||||||
| C18D1.1b | |||||||||
| CE51425 | |||||||||
| C18D1.1b.1 | |||||||||
| Other_name | CELE_C18D1.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | die-1 | ||||||||
| DB_info | Database | AceView | gene | 2K352 | |||||
| WormQTL | gene | WBGene00000995 | |||||||
| SignaLink | protein | WBGene00000995 | |||||||
| WormFlux | gene | WBGene00000995 | |||||||
| NDB | locus_tag | CELE_C18D1.1 | |||||||
| Panther | gene | CAEEL|Gene_ORFName=CELE_C18D1.1|UniProtKB=A0A131MCL4 | |||||||
| family | PTHR21190 | ||||||||
| NCBI | gene | 174569 | |||||||
| RefSeq | protein | NM_001322752.3 | |||||||
| NM_063774.8 | |||||||||
| TrEMBL | UniProtAcc | A0A131MCL4 | |||||||
| A0A131MCR4 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A131MCL4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:22 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | die | ||||||||
| Allele (111) | |||||||||
| Legacy_information | w34 homozygotes are zygotic embryonic lethal, arrest at two-fold stage. Dorsal hypodermal cells fail to intercalate.Cloned: C18D1.1, encoding zinc finger protein. | ||||||||
| Strain | WBStrain00029359 | ||||||||
| WBStrain00022735 | |||||||||
| WBStrain00022754 | |||||||||
| WBStrain00029337 | |||||||||
| WBStrain00029384 | |||||||||
| WBStrain00029393 | |||||||||
| WBStrain00030020 | |||||||||
| WBStrain00029959 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00002156 | ||||||||
| 00002157 | |||||||||
| 00002158 | |||||||||
| 00002159 | |||||||||
| 00002160 | |||||||||
| 00002161 | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00007670 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Structured_description | Concise_description | die-1 encodes a C2H2 zinc finger protein containing four fingers, homologous to CG18265-PA in Drosophila; DIE-1 is autonomously required in the posterior dorsal hypodermis for intercalation, for morphogenesis in other embryonic tissues, and for normal postembryonic growth and vulval development. | Paper_evidence | WBPaper00003324 | |||||
| WBPaper00004781 | |||||||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Involved in several processes, including cell fate specification; maintenance of left/right asymmetry; and neuron development involved in amphid sensory organ development. Expressed in several structures, including amphid neurons; intestine; pharynx; somatic nervous system; and tail. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C18D1.1a | |||||||
| C18D1.1b | |||||||||
| Corresponding_CDS_history | C18D1.1:wp252 | ||||||||
| Corresponding_transcript | C18D1.1a.1 | ||||||||
| C18D1.1b.1 | |||||||||
| Other_sequence | JI484136.1 | ||||||||
| JI464513.1 | |||||||||
| CR04843 | |||||||||
| CRC07295_1 | |||||||||
| FK802815.1 | |||||||||
| JI164714.1 | |||||||||
| CBC03316_1 | |||||||||
| JI164642.1 | |||||||||
| Associated_feature (30) | |||||||||
| Transcription_factor | WBTranscriptionFactor000961 | ||||||||
| Experimental_info | RNAi_result (42) | ||||||||
| Expr_pattern (17) | |||||||||
| Drives_construct | WBCnstr00000291 | ||||||||
| WBCnstr00001604 | |||||||||
| WBCnstr00006655 | |||||||||
| WBCnstr00008239 | |||||||||
| WBCnstr00012584 | |||||||||
| WBCnstr00015216 | |||||||||
| WBCnstr00016506 | |||||||||
| WBCnstr00018897 | |||||||||
| WBCnstr00018909 | |||||||||
| WBCnstr00037150 | |||||||||
| Construct_product | WBCnstr00006601 | ||||||||
| WBCnstr00015373 | |||||||||
| WBCnstr00015374 | |||||||||
| WBCnstr00018909 | |||||||||
| WBCnstr00018910 | |||||||||
| WBCnstr00037150 | |||||||||
| Antibody | WBAntibody00000388 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction (301) | |||||||||
| Anatomy_function | WBbtf0633 | ||||||||
| WBbtf0634 | |||||||||
| Map_info | Map | II | Position | 1.87318 | Error | 0.003278 | |||
| Positive | Inside_rearr | mnDf71 | |||||||
| Positive_clone | C18D1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| K10A2 | Person_evidence | WBPerson539 | |||||||
| Author_evidence | Hardin JD | ||||||||
| Negative | Outside_rearr | mnDf61 | |||||||
| mnDf83 | |||||||||
| Mapping_data | Pos_neg_data | 10656 | |||||||
| 10657 | |||||||||
| 10658 | |||||||||
| Reference (41) | |||||||||
| Remark | [Heid PJ, Hardin J] die-1 = C18D1.1 | ||||||||
| Data extracted from Heid et al (2001) by JAH | |||||||||
| Method | Gene |
