WormBase Tree Display for Gene: WBGene00000800
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WBGene00000800 | SMap | S_parent | Sequence | Y23H5A | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | cars-1 | Person_evidence | WBPerson36 | |||
WBPerson10953 | |||||||
Sequence_name | Y23H5A.7 | ||||||
Molecular_name | Y23H5A.7b | ||||||
Y23H5A.7b.1 | |||||||
CE54491 | |||||||
Y23H5A.7c | |||||||
CE49746 | |||||||
Y23H5A.7c.1 | |||||||
Other_name | crs-1 | ||||||
CELE_Y23H5A.7 | Accession_evidence | NDB | BX284601 | ||||
Public_name | cars-1 | ||||||
DB_info | Database | AceView | gene | 1D192 | |||
WormQTL | gene | WBGene00000800 | |||||
WormFlux | gene | WBGene00000800 | |||||
NDB | locus_tag | CELE_Y23H5A.7 | |||||
Panther | gene | CAEEL|WormBase=WBGene00000800|UniProtKB=O76618 | |||||
family | PTHR10890 | ||||||
NCBI | gene | 171821 | |||||
RefSeq | protein | NM_001306359.3 | |||||
NM_058613.7 | |||||||
KEGG | KEGG_id | 6.1.1.16 | |||||
NemaPath | KEGG_id | 6.1.1.16 | |||||
TrEMBL | UniProtAcc | A0A061ACL3 | |||||
A0A8S4QD27 | |||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | cars | ||||||
Allele (97) | |||||||
Strain | WBStrain00036845 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (17) | |||||||
Ortholog (41) | |||||||
Paralog | WBGene00000801 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||
Structured_description | Concise_description | cars-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis; CARS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. | Paper_evidence | WBPaper00004402 | |||
WBPaper00004424 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 03 Nov 2015 00:00:00 | ||||||
Automated_description | Predicted to enable ATP binding activity and cysteine-tRNA ligase activity. Predicted to be involved in cysteinyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of human CARS1 (cysteinyl-tRNA synthetase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y23H5A.7b | |||||
Y23H5A.7c | |||||||
Corresponding_CDS_history | Y23H5A.7a:wp282 | ||||||
Y23H5A.7b:wp282 | |||||||
Corresponding_transcript | Y23H5A.7b.1 | ||||||
Y23H5A.7c.1 | |||||||
Other_sequence (60) | |||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result (25) | ||||||
Expr_pattern | Expr1015575 | ||||||
Expr1030499 | |||||||
Expr1159226 | |||||||
Expr2009721 | |||||||
Expr2027960 | |||||||
Drives_construct | WBCnstr00037987 | ||||||
Construct_product | WBCnstr00037987 | ||||||
Microarray_results (34) | |||||||
Expression_cluster (107) | |||||||
Interaction (91) | |||||||
Map_info | Map | I | Position | -8.11751 | Error | 0.030644 | |
Positive | Positive_clone | Y23H5A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00041771 | |||||||
WBPaper00055090 | |||||||
WBPaper00064339 | |||||||
Remark | dl1 : probably cytoplasmic | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |