WormBase Tree Display for Gene: WBGene00000798
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WBGene00000798 | Evidence | Paper_evidence | WBPaper00005857 | ||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C14A4 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | crn | ||||||
Allele (16) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (25) | |||||||
Contained_in_operon | CEOP2496 | ||||||
Ortholog (34) | |||||||
Paralog | WBGene00000202 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00007201 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | crn-5 encodes a cell death-related nuclease which is a homolog of Rrp46, an eukaryotic ribonulease component of the exosome, involved in RNA processing; crn-5 is believed to function in a large multinuclease complex, the degradeosome, whose components include the protein products of cps-6, crn-1, crn-4, cpy-13 and other non-nuclease components like wah-1, to promote apoptotic DNA degradation; crn-5 has been shown to bind DNA without detectable DNase activity but enhances the DNase activity of CRN-4, a DEDD family apoptotic DNAase and RNase. | Paper_evidence | WBPaper00005857 | |||
WBPaper00036712 | |||||||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 22 Oct 2010 00:00:00 | ||||||
Automated_description | Enables double-stranded DNA binding activity and enzyme binding activity. Involved in RNA processing and apoptotic DNA fragmentation. Part of exosome (RNase complex). Is an ortholog of human EXOSC5 (exosome component 5). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C14A4.5 | |||||
Corresponding_transcript | C14A4.5.1 | ||||||
Other_sequence | Hbac_isotig03698 | ||||||
CJC05327_1 | |||||||
CGC00890_1 | |||||||
CBC01241_1 | |||||||
EX010442.1 | |||||||
Associated_feature | WBsf989405 | ||||||
WBsf222035 | |||||||
Experimental_info | RNAi_result (9) | ||||||
Expr_pattern | Expr1018453 | ||||||
Expr1030497 | |||||||
Expr1144540 | |||||||
Expr2010540 | |||||||
Expr2028780 | |||||||
Drives_construct | WBCnstr00037268 | ||||||
Construct_product | WBCnstr00037268 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (85) | |||||||
Interaction (40) | |||||||
WBProcess | WBbiopr:00000014 | ||||||
WBbiopr:00000103 | |||||||
Map_info | Map | II | Position | 3.12021 | Error | 0.000298 | |
Positive | Positive_clone | C14A4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00005857 | ||||||
WBPaper00006283 | |||||||
WBPaper00019408 | |||||||
WBPaper00027291 | |||||||
WBPaper00029254 | |||||||
WBPaper00029257 | |||||||
WBPaper00036712 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |