WormBase Tree Display for Gene: WBGene00000797
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WBGene00000797 | Evidence | Paper_evidence | WBPaper00005857 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | AH9 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | crn-4 | Person_evidence | WBPerson1606 | |||||
Sequence_name | AH9.2 | ||||||||
Molecular_name | AH9.2 | ||||||||
AH9.2.1 | |||||||||
CE03858 | |||||||||
Other_name | CELE_AH9.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | crn-4 | ||||||||
DB_info | Database (12) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | crn | ||||||||
Allele (44) | |||||||||
In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (20) | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00001332 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019724 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00019825 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | crn-4 encodes a DEDD family DNase, a cell death-related nuclease; crn-4 exhibits both DNase and RNase activities; crn-4 is believed to function in a large multinuclease complex, the degradeosome, whose components include the protein products of cps-6, crn-1, crn-5, cpy-13 and other non-nuclease components like wah-1, to promote apoptotic DNA degradation; crn-4 has been shown to bind DNA through its Zn-domain and cleave it through its N-terminal DEDDh domain; crn-4 interacts with crn-5 in protein binding experiments, this interaction has been shown to enhance crn-4 DNAase activity. | Paper_evidence | WBPaper00005857 | |||||
WBPaper00032328 | |||||||||
WBPaper00036712 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 22 Oct 2010 00:00:00 | ||||||||
Automated_description | Enables nuclease activity and single-stranded DNA binding activity. Involved in RNA catabolic process and apoptotic DNA fragmentation. Predicted to be located in cytoplasm. Is an ortholog of human ERI1 (exoribonuclease 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | AH9.2 | |||||||
Corresponding_transcript | AH9.2.1 | ||||||||
Other_sequence | CRC10371_1 | ||||||||
Associated_feature | WBsf1004276 | ||||||||
WBsf1004277 | |||||||||
WBsf1004278 | |||||||||
WBsf1022435 | |||||||||
WBsf237066 | |||||||||
Experimental_info | RNAi_result | WBRNAi00097988 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00009537 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027934 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038628 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00087548 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1011892 | ||||||||
Expr1030496 | |||||||||
Expr1142836 | |||||||||
Expr2010539 | |||||||||
Expr2028779 | |||||||||
Drives_construct | WBCnstr00037269 | ||||||||
Construct_product | WBCnstr00037269 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (152) | |||||||||
Interaction (16) | |||||||||
WBProcess | WBbiopr:00000014 | ||||||||
WBbiopr:00000103 | |||||||||
Map_info | Map | X | Position | -15.9429 | Error | 0.04732 | |||
Positive | Positive_clone | AH9 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00005857 | ||||||||
WBPaper00006283 | |||||||||
WBPaper00019408 | |||||||||
WBPaper00027291 | |||||||||
WBPaper00032328 | |||||||||
WBPaper00036712 | |||||||||
WBPaper00053142 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |