WormBase Tree Display for Gene: WBGene00000659
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| WBGene00000659 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | K12D12 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-84 | Person_evidence | WBPerson345 | |||||
| Sequence_name | K12D12.3 | ||||||||
| Molecular_name | K12D12.3 | ||||||||
| K12D12.3.1 | |||||||||
| CE02272 | |||||||||
| Other_name | CELE_K12D12.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | col-84 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00051341 | ||||||||
| WBStrain00055330 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00071673 | ||||||||
| 00071674 | |||||||||
| 00107655 | |||||||||
| Ortholog (41) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-84 encodes a nematode cuticular collagen; RNAi experiments that target col-84 (as well as neighboring genes) result in defects in embryonic and larval development, body morphology, and reproduction. | Paper_evidence | WBPaper00024497 | |||||
| WBPaper00025054 | |||||||||
| WBPaper00029258 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Sep 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 5. Is an ortholog of human COLQ (collagen like tail subunit of asymmetric acetylcholinesterase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110667 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2226) | ||||
| Molecular_info | Corresponding_CDS | K12D12.3 | |||||||
| Corresponding_transcript | K12D12.3.1 | ||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf222207 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00073217 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050652 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050654 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050655 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017049 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034312 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00073216 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011791 | ||||||||
| Expr1030388 | |||||||||
| Expr1154368 | |||||||||
| Expr2010430 | |||||||||
| Expr2028670 | |||||||||
| Drives_construct | WBCnstr00037391 | ||||||||
| Construct_product | WBCnstr00037391 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | II | Position | 4.08906 | Error | 0.003726 | |||
| Positive | Positive_clone | K12D12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005943 | ||||||||
| WBPaper00025088 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040160 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
