WormBase Tree Display for Gene: WBGene00000627
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WBGene00000627 | Evidence | Person_evidence | WBPerson345 | ||||||
---|---|---|---|---|---|---|---|---|---|
WBPerson651 | |||||||||
SMap | S_parent | Sequence | T28F2 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | col-50 | Person_evidence | WBPerson345 | |||||
Sequence_name | T28F2.6 | ||||||||
Molecular_name (4) | |||||||||
Other_name | CELE_T28F2.6 | Accession_evidence | NDB | BX284601 | |||||
Public_name | col-50 | ||||||||
DB_info | Database | AceView | gene | 1E218 | |||||
WormQTL | gene | WBGene00000627 | |||||||
WormFlux | gene | WBGene00000627 | |||||||
NDB | locus_tag | CELE_T28F2.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000627|UniProtKB=O01662 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 189050 | |||||||
RefSeq | protein | NM_001393238.1 | |||||||
TREEFAM | TREEFAM_ID | TF319043 | |||||||
TrEMBL | UniProtAcc | O01662 | |||||||
UniProt_GCRP | UniProtAcc | O01662 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele (31) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00025256 | ||||||||
00025257 | |||||||||
00025258 | |||||||||
00107633 | |||||||||
Ortholog (25) | |||||||||
Paralog (27) | |||||||||
Structured_description | Concise_description | col-50 encodes a cuticle collagen. | Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 03 Apr 2007 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T28F2.6 | |||||||
Corresponding_transcript | T28F2.6.1 | ||||||||
T28F2.6.2 | |||||||||
Other_sequence (20) | |||||||||
Associated_feature (5) | |||||||||
Experimental_info | RNAi_result | WBRNAi00036095 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054430 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004341 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1021300 | ||||||||
Expr1030370 | |||||||||
Expr1157974 | |||||||||
Expr2010402 | |||||||||
Expr2028644 | |||||||||
Drives_construct | WBCnstr00037417 | ||||||||
Construct_product | WBCnstr00037417 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (117) | |||||||||
Interaction | WBInteraction000318147 | ||||||||
WBInteraction000378892 | |||||||||
WBInteraction000401032 | |||||||||
WBInteraction000417258 | |||||||||
WBInteraction000419157 | |||||||||
WBInteraction000434872 | |||||||||
WBInteraction000448009 | |||||||||
WBInteraction000469617 | |||||||||
WBInteraction000472066 | |||||||||
WBInteraction000472666 | |||||||||
Map_info | Map | I | Position | -3.04174 | Error | 0.009173 | |||
Positive | Positive_clone | T28F2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00063926 | |||||||||
WBPaper00064788 | |||||||||
WBPaper00065080 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |