WormBase Tree Display for Gene: WBGene00000625
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| WBGene00000625 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | Y54E10BL | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-48 | Person_evidence | WBPerson345 | |||||
| Sequence_name | Y54E10BL.2 | ||||||||
| Molecular_name | Y54E10BL.2 | ||||||||
| Y54E10BL.2.1 | |||||||||
| CE25434 | |||||||||
| Other_name | CELE_Y54E10BL.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | col-48 | ||||||||
| DB_info | Database | AceView | gene | 1D579 | |||||
| WormQTL | gene | WBGene00000625 | |||||||
| WormFlux | gene | WBGene00000625 | |||||||
| NDB | locus_tag | CELE_Y54E10BL.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000625|UniProtKB=Q9N3D7 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 171873 | |||||||
| RefSeq | protein | NM_058687.5 | |||||||
| TrEMBL | UniProtAcc | Q9N3D7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N3D7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093713 | ||||||||
| 00093714 | |||||||||
| 00093715 | |||||||||
| 00107631 | |||||||||
| Ortholog (25) | |||||||||
| Paralog (161) | |||||||||
| Structured_description | Concise_description | col-48 encodes a cuticle collagen. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 03 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54E10BL.2 | |||||||
| Corresponding_transcript | Y54E10BL.2.1 | ||||||||
| Other_sequence (137) | |||||||||
| Associated_feature | WBsf643126 | ||||||||
| WBsf656099 | |||||||||
| WBsf656100 | |||||||||
| WBsf217359 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr1012250 | ||||||||
| Expr1030368 | |||||||||
| Expr1160791 | |||||||||
| Expr2010401 | |||||||||
| Expr2028643 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (288) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | I | Position | -5.09771 | Error | 0.064213 | |||
| Positive | Positive_clone | Y54E10BL | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061662 | |||||||||
| WBPaper00064788 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
