WormBase Tree Display for Gene: WBGene00000615
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WBGene00000615 | SMap | S_parent | Sequence | F54C9 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | col-38 | Person_evidence | WBPerson345 | |||||
Sequence_name | F54C9.4 | ||||||||
Molecular_name | F54C9.4 | ||||||||
F54C9.4.1 | |||||||||
CE20864 | |||||||||
Other_name | CELE_F54C9.4 | Accession_evidence | NDB | BX284602 | |||||
Public_name | col-38 | ||||||||
DB_info | Database | AceView | gene | 2I858 | |||||
WormQTL | gene | WBGene00000615 | |||||||
WormFlux | gene | WBGene00000615 | |||||||
NDB | locus_tag | CELE_F54C9.4 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000615|UniProtKB=Q20754 | |||||||
family | PTHR24637 | ||||||||
NCBI | gene | 174370 | |||||||
RefSeq | protein | NM_063409.7 | |||||||
SwissProt | UniProtAcc | Q20754 | |||||||
TREEFAM | TREEFAM_ID | TF319043 | |||||||
UniProt_GCRP | UniProtAcc | Q20754 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | col | ||||||||
Allele | WBVar01499702 | ||||||||
WBVar00372368 | |||||||||
WBVar01498435 | |||||||||
WBVar01499423 | |||||||||
WBVar00750967 | |||||||||
WBVar00750968 | |||||||||
WBVar01498940 | |||||||||
WBVar00226353 | |||||||||
Strain | WBStrain00033928 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00069005 | ||||||||
00069006 | |||||||||
00069007 | |||||||||
00069008 | |||||||||
00107624 | |||||||||
Contained_in_operon | CEOP2732 | ||||||||
Ortholog (30) | |||||||||
Paralog (165) | |||||||||
Structured_description | Concise_description | col-38 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies) required for normal body morphology. | Paper_evidence | WBPaper00005654 | |||||
Curator_confirmed | WBPerson48 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to be a structural constituent of cuticle. Involved in collagen and cuticulin-based cuticle development. Predicted to be located in nucleus. Expressed in hyp7 syncytium and seam cell. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F54C9.4 | |||||||
Corresponding_transcript | F54C9.4.1 | ||||||||
Other_sequence (21) | |||||||||
Associated_feature | WBsf1026937 | ||||||||
WBsf223519 | |||||||||
Experimental_info | RNAi_result | WBRNAi00048272 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007283 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00032765 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00008849 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram557 | ||||||||
Expr11723 | |||||||||
Expr11729 | |||||||||
Expr13633 | |||||||||
Expr13639 | |||||||||
Expr1010641 | |||||||||
Expr1030360 | |||||||||
Expr1152074 | |||||||||
Expr2010390 | |||||||||
Expr2028632 | |||||||||
Drives_construct | WBCnstr00001078 | ||||||||
WBCnstr00019337 | |||||||||
WBCnstr00037424 | |||||||||
WBCnstr00039893 | |||||||||
Construct_product | WBCnstr00037424 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (306) | |||||||||
Interaction (97) | |||||||||
Map_info | Map | II | Position | 0.817682 | Error | 0.000363 | |||
Positive | Positive_clone | F54C9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00043837 | |||||||||
WBPaper00044857 | |||||||||
WBPaper00048363 | |||||||||
WBPaper00053906 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00059191 | |||||||||
WBPaper00064788 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |