WormBase Tree Display for Gene: WBGene00000592
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WBGene00000592 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F08H9 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | coh-3 | |||||||
Sequence_name | F08H9.1 | ||||||||
Molecular_name | F08H9.1 | ||||||||
F08H9.1.1 | |||||||||
CE35852 | |||||||||
Other_name | CELE_F08H9.1 | Accession_evidence | NDB | BX284605 | |||||
Public_name | coh-3 | ||||||||
DB_info | Database | AceView | gene | 5O939 | |||||
WormQTL | gene | WBGene00000592 | |||||||
WormFlux | gene | WBGene00000592 | |||||||
NDB | locus_tag | CELE_F08H9.1 | |||||||
NCBI | gene | 179949 | |||||||
RefSeq | protein | NM_074182.3 | |||||||
TREEFAM | TREEFAM_ID | TF322271 | |||||||
TrEMBL | UniProtAcc | Q19232 | |||||||
UniProt_GCRP | UniProtAcc | Q19232 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | coh | ||||||||
Allele (53) | |||||||||
Legacy_information | [J. Loidl] no RNAi phenotype found. Name assigned on the basis of sequence homology | ||||||||
(F08H9.1) is homolog to the Rad21/Scc1/Rec8 family of cohesion proteins with known members in C. elegans, S. cerevisiae, S. pombe, A. thaliana and vertebrates. R-S-R is the acronym of the founder family | |||||||||
Strain | WBStrain00035161 | ||||||||
WBStrain00035162 | |||||||||
WBStrain00035163 | |||||||||
WBStrain00035164 | |||||||||
WBStrain00035528 | |||||||||
WBStrain00055740 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00063986 | ||||||||
Ortholog (20) | |||||||||
Paralog | WBGene00021560 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
Structured_description (2) | |||||||||
Molecular_info | Corresponding_CDS | F08H9.1 | |||||||
Corresponding_CDS_history | F08H9.1:wp111 | ||||||||
Corresponding_transcript | F08H9.1.1 | ||||||||
Other_sequence | CR12282 | ||||||||
CRC05466_1 | |||||||||
CBC13933_1 | |||||||||
Associated_feature | WBsf1002022 | ||||||||
WBsf1002023 | |||||||||
WBsf1002024 | |||||||||
WBsf1020844 | |||||||||
WBsf1020845 | |||||||||
Experimental_info | RNAi_result (15) | ||||||||
Expr_pattern | Expr11960 | ||||||||
Expr1027870 | |||||||||
Expr1030347 | |||||||||
Expr1148024 | |||||||||
Expr2010298 | |||||||||
Expr2028540 | |||||||||
Drives_construct | WBCnstr00037442 | ||||||||
Construct_product | WBCnstr00037442 | ||||||||
Antibody | WBAntibody00002562 | ||||||||
WBAntibody00002687 | |||||||||
Microarray_results (19) | |||||||||
Expression_cluster (123) | |||||||||
Interaction (28) | |||||||||
Map_info | Map | V | Position | 6.41169 | Error | 0.006664 | |||
Positive | Positive_clone | F08H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point (2) | ||||||||
Pseudo_map_position | |||||||||
Reference (22) | |||||||||
Remark | Sequence connection from [Loidl J] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |