WormBase Tree Display for Gene: WBGene00000543
expand all nodes | collapse all nodes | view schema
| WBGene00000543 | SMap | S_parent | Sequence | T04A8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clp-2 | Person_evidence | WBPerson349 | |||||
| Sequence_name | T04A8.16 | ||||||||
| Molecular_name | T04A8.16 | ||||||||
| T04A8.16.1 | |||||||||
| CE01070 | |||||||||
| Other_name | CELE_T04A8.16 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | clp-2 | ||||||||
| DB_info | Database | AceView | gene | 3F790 | |||||
| WormQTL | gene | WBGene00000543 | |||||||
| WormFlux | gene | WBGene00000543 | |||||||
| NDB | locus_tag | CELE_T04A8.16 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000543|UniProtKB=Q22143 | |||||||
| family | PTHR46143 | ||||||||
| NCBI | gene | 175618 | |||||||
| RefSeq | protein | NM_065563.5 | |||||||
| TREEFAM | TREEFAM_ID | TF322245 | |||||||
| TrEMBL | UniProtAcc | Q22143 | |||||||
| UniProt_GCRP | UniProtAcc | Q22143 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clp | ||||||||
| Allele (49) | |||||||||
| Strain | WBStrain00003127 | ||||||||
| WBStrain00028932 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP3835 | ||||||||
| Ortholog (39) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | clp-2 encodes a large calpain subunit that contains two predicted MIT (microtubule interacting and trafficking) domains and is homologous to the mammalian Calpain 7 proteins and the atypical, nuclear-localized Aspergillus calpain, PalB; by homology, CLP-2 is predicted to function as a calcium-dependent, cysteine protease that is involved in intracellular proteolysis and peptidolysis; however, as loss of clp-2 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of CLP-2 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00004403 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00005655 | |||||||||
| WBPaper00013602 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Expressed in head; hypodermis; intestinal cell; muscle cell; and tail. Is an ortholog of human CAPN7 (calpain 7). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T04A8.16 | |||||||
| Corresponding_transcript | T04A8.16.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf650994 | ||||||||
| WBsf226564 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Chronogram1965 | ||||||||
| Expr10017 | |||||||||
| Expr14807 | |||||||||
| Expr14808 | |||||||||
| Expr1025088 | |||||||||
| Expr1030325 | |||||||||
| Expr1155970 | |||||||||
| Expr2010244 | |||||||||
| Expr2028486 | |||||||||
| Drives_construct | WBCnstr00003610 | ||||||||
| WBCnstr00014646 | |||||||||
| WBCnstr00037462 | |||||||||
| WBCnstr00041428 | |||||||||
| Construct_product | WBCnstr00014651 | ||||||||
| WBCnstr00014657 | |||||||||
| WBCnstr00037462 | |||||||||
| WBCnstr00041428 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction | WBInteraction000211228 | ||||||||
| WBInteraction000288834 | |||||||||
| WBInteraction000354160 | |||||||||
| WBInteraction000439806 | |||||||||
| WBInteraction000548620 | |||||||||
| Map_info | Map | III | Position | -2.81896 | Error | 0.002299 | |||
| Positive | Positive_clone | T04A8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005513 | ||||||||
| WBPaper00027531 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061251 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
