WormBase Tree Display for Gene: WBGene00000444
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WBGene00000444 | SMap | S_parent | Sequence | T26C11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | ceh-21 | Person_evidence | WBPerson83 | |||||
Sequence_name | T26C11.6 | ||||||||
Molecular_name | T26C11.6 | ||||||||
T26C11.6.1 | |||||||||
CE29823 | |||||||||
Other_name | CELE_T26C11.6 | Accession_evidence | NDB | BX284606 | |||||
Public_name | ceh-21 | ||||||||
DB_info | Database | AceView | gene | XC468 | |||||
WormQTL | gene | WBGene00000444 | |||||||
WormFlux | gene | WBGene00000444 | |||||||
NDB | locus_tag | CELE_T26C11.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000444|UniProtKB=Q22811 | |||||||
family | PTHR14057 | ||||||||
NCBI | gene | 180504 | |||||||
RefSeq | protein | NM_001392732.1 | |||||||
SwissProt | UniProtAcc | Q22811 | |||||||
TREEFAM | TREEFAM_ID | TF318206 | |||||||
UniProt_GCRP | UniProtAcc | Q22811 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | ceh | ||||||||
Allele (101) | |||||||||
Legacy_information | [Burglin T] NMK. Encodes cut class homeoprotein. [Burglin and Ruvkun 1992;]. ONECUT class homeobox gene Ruvkun 01/98. | ||||||||
[C.elegansII] NMK. Encodes cut class homeoprotein (T26C11,6). [Burglin and Ruvkun 1992; TB] | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00076509 | ||||||||
00076510 | |||||||||
00076511 | |||||||||
00076512 | |||||||||
00076513 | |||||||||
00076514 | |||||||||
00076515 | |||||||||
00076516 | |||||||||
00076517 | |||||||||
00107412 | |||||||||
Contained_in_operon | CEOPX024 | ||||||||
Ortholog (20) | |||||||||
Paralog | WBGene00000464 | ||||||||
WBGene00000460 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000459 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00017538 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00015934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | ceh-21 encodes a a ONECUT class CUT homeobox protein with a single N-terminal cut domain and an OCAM domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; the OCAM domain is a nematode-specific motif conserved between CEH-21, CEH-41, and T02B5.2; ceh-21 is one of three nematode-specific ONECUT genes in a cluster with ceh-39 and ceh-41; CEH-21 may be required for muscle formation and differentiation, and is expressed in muscle precursor cells and differentiated gut cells; ceh-21 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00003249 | |||||
WBPaper00005164 | |||||||||
WBPaper00005654 | |||||||||
WBPaper00011755 | |||||||||
WBPaper00022408 | |||||||||
Person_evidence | WBPerson83 | ||||||||
Curator_confirmed | WBPerson13481 | ||||||||
WBPerson1843 | |||||||||
WBPerson480 | |||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed widely. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T26C11.6 | |||||||
Corresponding_transcript | T26C11.6.1 | ||||||||
Associated_feature | WBsf670127 | ||||||||
WBsf978280 | |||||||||
WBsf237032 | |||||||||
WBsf237033 | |||||||||
Transcription_factor | WBTranscriptionFactor000260 | ||||||||
Experimental_info | RNAi_result | WBRNAi00019250 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00019249 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00092894 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054185 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr7684 | ||||||||
Expr10229 | |||||||||
Expr10230 | |||||||||
Expr15571 | |||||||||
Expr1019569 | |||||||||
Expr1030252 | |||||||||
Expr1157727 | |||||||||
Expr1200003 | |||||||||
Expr2009868 | |||||||||
Expr2028108 | |||||||||
Drives_construct | WBCnstr00012829 | ||||||||
WBCnstr00015194 | |||||||||
WBCnstr00015195 | |||||||||
WBCnstr00016514 | |||||||||
WBCnstr00037533 | |||||||||
Construct_product | WBCnstr00037533 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (160) | |||||||||
Interaction (35) | |||||||||
Map_info | Map | X | Position | -17.4835 | Error | 0.002838 | |||
Positive | Positive_clone | BBBC5 | |||||||
T26C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||||
Reference (14) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |