WormBase Tree Display for Gene: WBGene00000216
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WBGene00000216 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | H22K11 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | asp | ||||||
Allele (35) | |||||||
Strain | WBStrain00051696 | ||||||
WBStrain00055639 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (20) | |||||||
Ortholog (36) | |||||||
Paralog (17) | |||||||
Structured_description | Concise_description | asp-3 encodes an aspartyl protease homolog that is required, in parallel with ASP-4 but downstream of CLP-1 and TRA-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf). | Paper_evidence | WBPaper00005513 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to enable aspartic-type endopeptidase activity. Involved in programmed necrotic cell death. Located in lysosome. Expressed in intestine and uterus. Is an ortholog of human NAPSA (napsin A aspartic peptidase). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info (4) | |||||||
Experimental_info | RNAi_result (20) | ||||||
Expr_pattern | Expr2132 | ||||||
Expr1020339 | |||||||
Expr1030133 | |||||||
Expr1153183 | |||||||
Expr2009467 | |||||||
Expr2027705 | |||||||
Drives_construct | WBCnstr00037656 | ||||||
Construct_product | WBCnstr00037656 | ||||||
Antibody | WBAntibody00002873 | ||||||
Microarray_results (25) | |||||||
Expression_cluster (245) | |||||||
Interaction (131) | |||||||
Map_info | Map | X | Position | -2.42178 | Error | 0.004086 | |
Positive | Positive_clone | H22K11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (29) | |||||||
Remark | Sequence connection from [Freedman J] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |