WormBase Tree Display for Gene: WBGene00000165
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| WBGene00000165 | SMap | S_parent | Sequence | Y48G8AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | aps-3 | Person_evidence | WBPerson360 | |||||
| WBPerson567 | |||||||||
| Sequence_name | Y48G8AL.14 | ||||||||
| Molecular_name | Y48G8AL.14 | ||||||||
| Y48G8AL.14.1 | |||||||||
| CE30461 | |||||||||
| Other_name | apt-8 | Person_evidence | WBPerson625 | ||||||
| CELE_Y48G8AL.14 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | aps-3 | ||||||||
| DB_info | Database | AceView | gene | 1B628 | |||||
| WormQTL | gene | WBGene00000165 | |||||||
| WormFlux | gene | WBGene00000165 | |||||||
| NDB | locus_tag | CELE_Y48G8AL.14 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000165|UniProtKB=Q8T874 | |||||||
| family | PTHR11753 | ||||||||
| NCBI | gene | 171691 | |||||||
| RefSeq | protein | NM_001392848.1 | |||||||
| TREEFAM | TREEFAM_ID | TF300189 | |||||||
| TrEMBL | UniProtAcc | Q8T874 | |||||||
| UniProt_GCRP | UniProtAcc | Q8T874 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | aps-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aps | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00037857 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00085046 | ||||||||
| 00085047 | |||||||||
| 00085048 | |||||||||
| 00085049 | |||||||||
| 00085050 | |||||||||
| 00106919 | |||||||||
| Contained_in_operon | CEOP1939 | ||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000157 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000159 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | aps-3 encodes an adaptin orthologous to the sigma3 subunit of the heterotetrameric adaptor protein complex 3 (AP-3); by homology, APS-3 is predicted to play a role in intracellular membrane trafficking and specifically, may be involved in transport of lysosomal membrane proteins from tubular sorting endosomes to lysosomes; loss of aps-3 activity via large-scale RNAi screens in the sensitized rrf-3 background indicates that, in C. elegans, APS-3 is required for fertility and reproduction. | Paper_evidence | WBPaper00004907 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00013401 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in vesicle-mediated transport. Predicted to be located in intracellular membrane-bounded organelle. Is an ortholog of human AP3S1 (adaptor related protein complex 3 subunit sigma 1) and AP3S2 (adaptor related protein complex 3 subunit sigma 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G8AL.14 | |||||||
| Corresponding_transcript | Y48G8AL.14.1 | ||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf648931 | ||||||||
| WBsf663906 | |||||||||
| WBsf663907 | |||||||||
| WBsf982670 | |||||||||
| WBsf1009197 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056965 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00026781 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116804 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090925 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026780 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061008 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085729 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027218 | ||||||||
| Expr1030094 | |||||||||
| Expr1160414 | |||||||||
| Expr2009368 | |||||||||
| Expr2027604 | |||||||||
| Drives_construct | WBCnstr00037693 | ||||||||
| Construct_product | WBCnstr00037693 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (33) | |||||||||
| Map_info | Map | I | Position | -16.9364 | Error | 0.002173 | |||
| Positive | Positive_clone | Y48G8AL | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004907 | ||||||||
| WBPaper00026639 | |||||||||
| WBPaper00029101 | |||||||||
| WBPaper00031800 | |||||||||
| WBPaper00032502 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
