WormBase Tree Display for Gene: WBGene00000029
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| WBGene00000029 | SMap | S_parent | Sequence | C03A7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | abu-6 | Person_evidence | WBPerson530 | |||||
| Sequence_name | C03A7.7 | ||||||||
| Molecular_name | C03A7.7 | ||||||||
| C03A7.7.1 | |||||||||
| CE07865 | |||||||||
| Other_name | pqn-6 | CGC_data_submission | |||||||
| CELE_C03A7.7 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | abu-6 | ||||||||
| DB_info | Database | AceView | gene | 5F636 | |||||
| WormQTL | gene | WBGene00000029 | |||||||
| WormFlux | gene | WBGene00000029 | |||||||
| NDB | locus_tag | CELE_C03A7.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000029|UniProtKB=O16501 | |||||||
| family | PTHR31895 | ||||||||
| NCBI | gene | 178903 | |||||||
| RefSeq | protein | NM_071982.6 | |||||||
| TREEFAM | TREEFAM_ID | TF315535 | |||||||
| TrEMBL | UniProtAcc | O16501 | |||||||
| UniProt_GCRP | UniProtAcc | O16501 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abu | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00028185 | ||||||||
| 00028186 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (30) | |||||||||
| Structured_description | Concise_description | abu-6 encodes a transmembrane protein with a predicted signal sequence, a glutamine/asparagine-rich domain and multiple cysteine-rich repeats (DUF139); abu-6 is a member of a paralogous group of genes whose expression is transcriptionally up-regulated during times of cuticle synthesis, such as during late embryogenesis and during the molts; abu-6 expression is induced by blockage of the unfolded-protein response in the endoplasmic reticulum, and ABU-6 may help protect the organism from damage by improperly folded nascent protein; RNAi experiments targeting abu-6, and potentially several otherparalogous genes, result in slow growth and defective function of the pharyngeal grinder. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005432 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| WBPaper00013108 | |||||||||
| WBPaper00045960 | |||||||||
| Person_evidence | WBPerson507 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 13 Jul 2015 00:00:00 | ||||||||
| Automated_description | Involved in pharynx development. Expressed in pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C03A7.7 | |||||||
| Corresponding_transcript | C03A7.7.1 | ||||||||
| Associated_feature | WBsf652611 | ||||||||
| WBsf999942 | |||||||||
| WBsf1019594 | |||||||||
| WBsf1019595 | |||||||||
| WBsf233655 | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern | Expr12492 | ||||||||
| Expr1143591 | |||||||||
| Drives_construct | WBCnstr00037785 | ||||||||
| Construct_product | WBCnstr00021462 | ||||||||
| WBCnstr00037785 | |||||||||
| Microarray_results | SMD_C03A7.7 | ||||||||
| A_12_P110169 | |||||||||
| GPL3518_CE07865 | |||||||||
| GPL8304_CE_WBGene00000029_A | |||||||||
| GPL8304_CE_WBGene00000030_A | |||||||||
| GPL8673_C03A7_7P00024 | |||||||||
| GPL9450_C03A7.7 | |||||||||
| GPL9450_C03A7.8 | |||||||||
| cea2.d.10265 | |||||||||
| cea2.d.10280 | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction (36) | |||||||||
| WBProcess | WBbiopr:00000046 | ||||||||
| WBbiopr:00000079 | |||||||||
| Map_info | Map | V | Position | -2.42334 | Error | 0.005778 | |||
| Positive | Positive_clone | C03A7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026929 | ||||||||
| WBPaper00031097 | |||||||||
| WBPaper00032003 | |||||||||
| WBPaper00039120 | |||||||||
| WBPaper00045960 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064648 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
