WormBase Tree Display for Gene: WBGene00000006
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| WBGene00000006 | Evidence | Author_evidence | Veljkovic E | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Verrey F | |||||||||
| SMap | S_parent | Sequence | C55C2 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | aat-5 | |||||||
| Sequence_name | C55C2.5 | ||||||||
| Molecular_name | C55C2.5a | ||||||||
| C55C2.5a.1 | |||||||||
| CE37758 | |||||||||
| C55C2.5b | |||||||||
| C55C2.5c | |||||||||
| C55C2.5d | |||||||||
| Other_name | CELE_C55C2.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | aat-5 | ||||||||
| DB_info | Database | AceView | gene | 1D140 | |||||
| WormQTL | gene | WBGene00000006 | |||||||
| WormFlux | gene | WBGene00000006 | |||||||
| NDB | locus_tag | CELE_C55C2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000006|UniProtKB=H2KZG9 | |||||||
| family | PTHR11785 | ||||||||
| NCBI | gene | 171814 | |||||||
| RefSeq | protein | NR_131780.1 | |||||||
| NM_058601.6 | |||||||||
| NR_131358.1 | |||||||||
| NR_131359.1 | |||||||||
| TrEMBL | UniProtAcc | H2KZG9 | |||||||
| UniProt_GCRP | UniProtAcc | H2KZG9 | |||||||
| RNAcentral | URSid | URS000076F721 | |||||||
| URS000077898C | |||||||||
| URS0000788481 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aat | ||||||||
| Allele (102) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022261 | ||||||||
| 00022262 | |||||||||
| 00022263 | |||||||||
| 00022264 | |||||||||
| 00022265 | |||||||||
| 00106526 | |||||||||
| 00106527 | |||||||||
| 00106528 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | aat-5 encodes a predicted amino acid transporter catalytic subunit; unlike catalytic subunits in other organisms, however, AAT-5 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-5 does not require this residue for heterodimer formation or alternatively, does not require the glycoprotein subunit for function. | Paper_evidence | WBPaper00006408 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 03 Mar 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55C2.5a | |||||||
| Corresponding_CDS_history | C55C2.5a:wp135 | ||||||||
| C55C2.5b:wp135 | |||||||||
| C55C2.5b:wp243 | |||||||||
| C55C2.5c:wp135 | |||||||||
| C55C2.5c:wp243 | |||||||||
| Corresponding_transcript | C55C2.5b | ||||||||
| C55C2.5c | |||||||||
| C55C2.5d | |||||||||
| C55C2.5a.1 | |||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf717461 | ||||||||
| WBsf982906 | |||||||||
| WBsf982907 | |||||||||
| WBsf982908 | |||||||||
| WBsf982909 | |||||||||
| WBsf1009360 | |||||||||
| WBsf219042 | |||||||||
| WBsf219043 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00043239 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003248 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027566 | ||||||||
| Expr1030004 | |||||||||
| Expr1147218 | |||||||||
| Expr2009068 | |||||||||
| Expr2027304 | |||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (162) | |||||||||
| Interaction | WBInteraction000378168 | ||||||||
| WBInteraction000474484 | |||||||||
| Map_info | Map | I | Position | -8.35384 | Error | 0.01644 | |||
| Positive | Positive_clone | C55C2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006408 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
