WormBase Tree Display for Gene: WBGene00004728
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WBGene00004728 | SMap | S_parent | Sequence | F21H11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | sax-2 | Person_evidence | WBPerson42 | |||||
Sequence_name | F21H11.2 | ||||||||
Molecular_name | F21H11.2a | ||||||||
F21H11.2a.1 | |||||||||
CE38067 | |||||||||
F21H11.2b | |||||||||
CE38068 | |||||||||
F21H11.2b.1 | |||||||||
Other_name | CELE_F21H11.2 | Accession_evidence | NDB | BX284603 | |||||
Public_name | sax-2 | ||||||||
DB_info | Database | AceView | gene | 3G219 | |||||
WormQTL | gene | WBGene00004728 | |||||||
WormFlux | gene | WBGene00004728 | |||||||
NDB | locus_tag | CELE_F21H11.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004728|UniProtKB=Q5DX48 | |||||||
family | PTHR12295 | ||||||||
NCBI | gene | 175697 | |||||||
RefSeq | protein | NM_171118.6 | |||||||
NM_171117.5 | |||||||||
TREEFAM | TREEFAM_ID | TF313568 | |||||||
TrEMBL | UniProtAcc | Q5DX48 | |||||||
H2KZU6 | |||||||||
UniProt_GCRP | UniProtAcc | Q5DX48 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 26 Nov 2004 09:02:28 | WBPerson2970 | Event | Acquires_merge | WBGene00017682 | ||||
Acquires_merge | WBGene00017682 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sax | ||||||||
Allele (298) | |||||||||
Strain | WBStrain00005244 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00022537 | ||||||||
00022538 | |||||||||
00022539 | |||||||||
00022540 | |||||||||
00022541 | |||||||||
00113102 | |||||||||
Ortholog (54) | |||||||||
Structured_description | Concise_description | sax-2 encodes a conserved protein that contains HEAT/Armadillo repeats and is related to Drosophila furry; sax-2 activity is required for maintaining normal neuronal morphology, particularly proper neurite outgrowth and termination; sax-2 activity is also required for normal male mating behavior and gonad morphogenesis in both sexes; a sax-2 reporter gene fusion indicates that sax-2 is expressed in head, tail, and ventral cord neurons. | Paper_evidence | WBPaper00003665 | |||||
WBPaper00004340 | |||||||||
WBPaper00024477 | |||||||||
WBPaper00027335 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 24 Jan 2008 00:00:00 | ||||||||
Automated_description | Involved in neuron projection development. Predicted to be located in cell cortex and site of polarized growth. Expressed in head neurons; tail neurons; and ventral nerve cord. Is an ortholog of human FRY (FRY microtubule binding protein) and FRYL (FRY like transcription coactivator). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F21H11.2a | |||||||
F21H11.2b | |||||||||
Corresponding_CDS_history | F21H11.2a:wp138 | ||||||||
F21H11.2b:wp138 | |||||||||
Corresponding_transcript | F21H11.2a.1 | ||||||||
F21H11.2b.1 | |||||||||
Other_sequence (24) | |||||||||
Associated_feature (23) | |||||||||
Experimental_info | RNAi_result (13) | ||||||||
Expr_pattern | Expr3110 | ||||||||
Expr1020311 | |||||||||
Expr1032332 | |||||||||
Expr1149172 | |||||||||
Expr2015607 | |||||||||
Expr2033842 | |||||||||
Drives_construct | WBCnstr00035425 | ||||||||
Construct_product | WBCnstr00035425 | ||||||||
Microarray_results (27) | |||||||||
Expression_cluster (155) | |||||||||
Interaction (38) | |||||||||
Map_info | Map | III | Position | -2.13133 | Error | 0.008596 | |||
Positive | Positive_clone | F21H11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4046 | |||||||
4725 | |||||||||
Reference (29) | |||||||||
Remark | Description and Allele (ky216) data extracted from Zallen JA, Kirch SA, Bargmann CI [ck1 020828] | ||||||||
Method | Gene |