WormBase Tree Display for Gene: WBGene00021560
expand all nodes | collapse all nodes | view schema
| WBGene00021560 | SMap | S_parent | Sequence | Y45G5AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | coh-4 | Person_evidence | WBPerson574 | |||||
| Sequence_name | Y45G5AM.8 | ||||||||
| Molecular_name | Y45G5AM.8a | ||||||||
| Y45G5AM.8a.1 | |||||||||
| CE27409 | |||||||||
| Y45G5AM.8b | |||||||||
| CE51569 | |||||||||
| Y45G5AM.8c | |||||||||
| CE51556 | |||||||||
| Y45G5AM.8b.1 | |||||||||
| Y45G5AM.8c.1 | |||||||||
| Other_name | CELE_Y45G5AM.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | coh-4 | ||||||||
| DB_info | Database | AceView | gene | 5E652 | |||||
| WormQTL | gene | WBGene00021560 | |||||||
| WormFlux | gene | WBGene00021560 | |||||||
| NDB | locus_tag | CELE_Y45G5AM.8 | |||||||
| NCBI | gene | 178818 | |||||||
| RefSeq | protein | NM_001330833.3 | |||||||
| NM_071760.3 | |||||||||
| NM_001330834.3 | |||||||||
| TrEMBL | UniProtAcc | A0A168HB71 | |||||||
| Q95XJ4 | |||||||||
| A0A163UTM2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95XJ4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Mar 2009 16:33:08 | WBPerson9133 | Name_change | CGC_name | coh-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | coh | ||||||||
| Allele (163) | |||||||||
| Strain | WBStrain00035161 | ||||||||
| WBStrain00035162 | |||||||||
| WBStrain00035163 | |||||||||
| WBStrain00035164 | |||||||||
| WBStrain00055740 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089042 | ||||||||
| Contained_in_operon | CEOP5562 | ||||||||
| Ortholog (20) | |||||||||
| Paralog | WBGene00000592 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | coh-4 encodes a member of the Rad21/Rec8-like family of cohesion proteins known as kleisins; COH-4, along with its paralogs REC-8 and COH-3, function as members of a meiotic cohesin complex that mediates sister chromatid cohesion. | Paper_evidence | WBPaper00034684 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 29 Nov 2010 00:00:00 | ||||||||
| Automated_description | Involved in meiotic sister chromatid cohesion. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y45G5AM.8a | |||||||
| Y45G5AM.8b | |||||||||
| Y45G5AM.8c | |||||||||
| Corresponding_transcript | Y45G5AM.8a.1 | ||||||||
| Y45G5AM.8b.1 | |||||||||
| Y45G5AM.8c.1 | |||||||||
| Associated_feature | WBsf668649 | ||||||||
| WBsf668856 | |||||||||
| WBsf668857 | |||||||||
| WBsf999747 | |||||||||
| WBsf999748 | |||||||||
| WBsf999749 | |||||||||
| WBsf1019467 | |||||||||
| WBsf233561 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056638 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr11961 | ||||||||
| Expr1039438 | |||||||||
| Expr1160110 | |||||||||
| Expr2010299 | |||||||||
| Expr2028541 | |||||||||
| Antibody | WBAntibody00002562 | ||||||||
| WBAntibody00002687 | |||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction | WBInteraction000554911 | ||||||||
| WBInteraction000560270 | |||||||||
| WBInteraction000583689 | |||||||||
| WBInteraction000584069 | |||||||||
| Map_info | Map | V | Position | -6.34419 | Error | 0.01466 | |||
| Positive | Positive_clone | Y45G5AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00039264 | ||||||||
| WBPaper00039286 | |||||||||
| WBPaper00041481 | |||||||||
| WBPaper00043286 | |||||||||
| WBPaper00043779 | |||||||||
| WBPaper00047300 | |||||||||
| WBPaper00047307 | |||||||||
| WBPaper00049196 | |||||||||
| WBPaper00052027 | |||||||||
| WBPaper00063050 | |||||||||
| WBPaper00064614 | |||||||||
| WBPaper00064969 | |||||||||
| WBPaper00065070 | |||||||||
| WBPaper00065293 | |||||||||
| WBPaper00065958 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
