WormBase Tree Display for Gene: WBGene00010317
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| WBGene00010317 | SMap | S_parent | Sequence | F59B8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | idh-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | F59B8.2 | ||||||||
| Molecular_name | F59B8.2a | ||||||||
| F59B8.2a.1 | |||||||||
| CE03436 | |||||||||
| F59B8.2b | |||||||||
| CE47303 | |||||||||
| F59B8.2c | |||||||||
| CE47163 | |||||||||
| F59B8.2b.1 | |||||||||
| F59B8.2c.1 | |||||||||
| Other_name | CELE_F59B8.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | idh-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Oct 2008 10:23:18 | WBPerson2970 | Name_change | CGC_name | idh-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | idh | ||||||||
| Allele (27) | |||||||||
| Strain | WBStrain00003527 | ||||||||
| WBStrain00002807 | |||||||||
| WBStrain00032810 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00007942 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | idh-1 encodes a predicted cytosolic isocitrate dehydrogenase; by homology, IDH-1 is predicted to catalyze the formation of alpha-ketoglutarate from isocitrate. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 26 Oct 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable isocitrate dehydrogenase (NADP+) activity. Predicted to be involved in NADP metabolic process and isocitrate metabolic process. Predicted to be located in cytosol; mitochondrion; and peroxisome. Expressed in tail. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); glioblastoma; and hematologic cancer (multiple). Is an ortholog of human IDH1 (isocitrate dehydrogenase (NADP(+)) 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed (2) | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:5016 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||
| DOID:4928 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:3068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:0050908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:3907 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:417 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| DOID:9119 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:5382) | ||||||
| Molecular_info | Corresponding_CDS | F59B8.2a | |||||||
| F59B8.2b | |||||||||
| F59B8.2c | |||||||||
| Corresponding_transcript | F59B8.2a.1 | ||||||||
| F59B8.2b.1 | |||||||||
| F59B8.2c.1 | |||||||||
| Other_sequence (57) | |||||||||
| Associated_feature | WBsf668157 | ||||||||
| WBsf668158 | |||||||||
| WBsf981804 | |||||||||
| WBsf997420 | |||||||||
| WBsf1017963 | |||||||||
| WBsf230567 | |||||||||
| WBsf230568 | |||||||||
| WBsf230569 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00090634 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00080812 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065271 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016084 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033293 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049155 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113980 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1063 | ||||||||
| Chronogram1718 | |||||||||
| Expr6263 | |||||||||
| Expr6264 | |||||||||
| Expr1018358 | |||||||||
| Expr1034502 | |||||||||
| Expr1152898 | |||||||||
| Expr2012669 | |||||||||
| Expr2030905 | |||||||||
| Drives_construct | WBCnstr00003334 | ||||||||
| WBCnstr00004581 | |||||||||
| WBCnstr00031510 | |||||||||
| Construct_product | WBCnstr00031510 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (219) | |||||||||
| Interaction (103) | |||||||||
| Map_info | Map | IV | Position | 4.24582 | Error | 0.002337 | |||
| Positive | Positive_clone | F59B8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026952 | ||||||||
| WBPaper00027145 | |||||||||
| WBPaper00031648 | |||||||||
| WBPaper00033003 | |||||||||
| WBPaper00033162 | |||||||||
| WBPaper00037414 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044730 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056058 | |||||||||
| WBPaper00063380 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
