WormBase Tree Display for Gene: WBGene00009983

WBGene00009983 SMap: S_parent: Sequence: F53F1
  Identity: Version: 2
    Name: CGC_name: cut-2 Paper_evidence: WBPaper00001968
          Person_evidence: WBPerson52
      Sequence_name: F53F1.5
      Molecular_name: F53F1.5
        F53F1.5.1
        CE10940
      Other_name: vmp-2
        CELE_F53F1.5 Accession_evidence: NDB BX284605
      Public_name: cut-2
    DB_info: Database: AceView gene 5N893
        WormQTL gene WBGene00009983
        WormFlux gene WBGene00009983
        NDB locus_tag CELE_F53F1.5
        Panther gene CAEEL|WormBase=WBGene00009983|UniProtKB=P34682
          family PTHR23261
        NCBI gene 179823
        RefSeq protein NM_073924.5
        SwissProt UniProtAcc P34682
        UniProt_GCRP UniProtAcc P34682
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 23 Feb 2011 09:01:26 WBPerson2970 Event: Acquires_merge: WBGene00000852
              Name_change: CGC_name: cut-2
                Other_name: vmp-2
      Acquires_merge: WBGene00000852
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cut
    Allele (29)
    Legacy_information: [C.elegansII] NMK. Cross-hybridizes to Drosophila vitelline membrane protein gene (pka vmp-2); encodes collagenase-resistant cuticle component, predicted 231 aa secreted protein, repetitious,some similarity to CUT-1. CUT-2 present in cortical layer (all stages), and under alae (dauers). [Lassandro et al. 1994; NA]
    RNASeq_FPKM (74)
    GO_annotation: 00043939
      00043940
      00043941
      00043942
    Ortholog (20)
    Structured_description: Concise_description: cut-2 encodes a secreted protein which is a component of cuticlin, the insoluble residue of nematode cuticles; CUT-2 is expressed during all developmental stages and contributes to the external cortical layer of the cuticle of all larval stages. Paper_evidence (2)
          Curator_confirmed: WBPerson1843
            WBPerson324
          Date_last_updated: 21 Mar 2011 00:00:00
      Automated_description: Predicted to be a structural constituent of cuticle. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53F1.5
    Corresponding_transcript: F53F1.5.1
    Other_sequence (17)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00048135 Inferred_automatically: RNAi_primary
      WBRNAi00015516 Inferred_automatically: RNAi_primary
      WBRNAi00015517 Inferred_automatically: RNAi_primary
      WBRNAi00030253 Inferred_automatically: RNAi_primary
      WBRNAi00097122 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021438
      Expr1034353
      Expr1151944
      Expr2010599
      Expr2028839
    Drives_construct: WBCnstr00031765
    Construct_product: WBCnstr00031765
    Antibody: WBAntibody00001504
      WBAntibody00001559
      WBAntibody00001786
    Microarray_results (17)
    Expression_cluster (327)
    Interaction (125)
  Map_info: Map: V Position: 5.26522 Error: 0.004073
    Positive: Positive_clone: F53F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00001493
    WBPaper00001688
    WBPaper00001986
    WBPaper00002005
    WBPaper00002017
    WBPaper00002705
    WBPaper00003019
    WBPaper00015345
    WBPaper00020964
    WBPaper00021901
    WBPaper00064676
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene