WormBase Tree Display for Gene: WBGene00006375

WBGene00006375 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F26D2
  Identity: Version: 2
    Name: CGC_name: syp-1 Person_evidence: WBPerson1547
      Sequence_name: F26D2.2
      Molecular_name: F26D2.2
        F26D2.2.1
        CE33925
      Other_name: CELE_F26D2.2 Accession_evidence: NDB BX284605
      Public_name: syp-1
    DB_info: Database (9)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:40 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00043289
      Acquires_merge: WBGene00043289
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syp
    Allele (63)
    Strain: WBStrain00000290
      WBStrain00034785
      WBStrain00034786
      WBStrain00051119
    RNASeq_FPKM (74)
    GO_annotation: 00020833
      00020834
      00020835
      00020836
      00020837
      00020838
      00020839
      00020840
      00020841
    Ortholog: WBGene00057339 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00025487 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
      WBGene00127788 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
      chrV_pilon.g17139 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: syp-1 encodes a coiled-coil protein; syp-1 activity is required for stabilizing homologous associations between paired meiotic prophase chromosomes and for promoting crossover recombination; SYP-1 is a synaptonemal complex component that localizes to the central element that forms between paired homologous pachytene chromosomes. Paper_evidence: WBPaper00005462
          Curator_confirmed: WBPerson1843
          Date_last_updated: 16 Mar 2009 00:00:00
      Automated_description: Enables protein homodimerization activity. Involved in positive regulation of reciprocal meiotic recombination; regulation of chromosome segregation; and synaptonemal complex assembly. Located in central element. Expressed in germ line. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F26D2.2
    Corresponding_CDS_history: F26D2.2:wp100
    Corresponding_transcript: F26D2.2.1
    Other_sequence: GR977571.1
      SC00265
      CBC02102_1
      CBC06172_1
      CJC04954_1
    Associated_feature: WBsf233110
  Experimental_info: RNAi_result (31)
    Expr_pattern (11)
    Drives_construct: WBCnstr00034384
    Construct_product: WBCnstr00016721
      WBCnstr00034384
    Antibody (22)
    Microarray_results (30)
    Expression_cluster (147)
    Interaction (126)
  Map_info: Map: V Position: 10.0424 Error: 0.001284
    Positive: Positive_clone: F26D2 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4776
        5344
    Pseudo_map_position
  Reference: WBPaper00005462
    WBPaper00005486
    WBPaper00005636
    WBPaper00005820
    WBPaper00005919
    WBPaper00006010
    WBPaper00006086
    WBPaper00006502
    WBPaper00010625
    WBPaper00016995
    WBPaper00017876
    WBPaper00018305
    WBPaper00018747
    WBPaper00018898
    WBPaper00024045
    WBPaper00024115
    WBPaper00024249
    WBPaper00024638
    WBPaper00024789
    WBPaper00024982
    WBPaper00026317
    WBPaper00026972
    WBPaper00026985
    WBPaper00027740
    WBPaper00027942
    WBPaper00028010
    WBPaper00028860
    WBPaper00030742
    WBPaper00030764
    WBPaper00030765
    WBPaper00031172
    WBPaper00031432
    WBPaper00031510
    WBPaper00031675
    WBPaper00032269
    WBPaper00032294
    WBPaper00033597
    WBPaper00034684
    WBPaper00034994
    WBPaper00035253
    WBPaper00035468
    WBPaper00035521
    WBPaper00036368
    WBPaper00036858
    WBPaper00038491
    WBPaper00038696
    WBPaper00039342
    WBPaper00039364
    WBPaper00039957
    WBPaper00040299
    WBPaper00040348
    WBPaper00041922
    WBPaper00044548
    WBPaper00047307
    WBPaper00047310
    WBPaper00047420
    WBPaper00048200
    WBPaper00050461
    WBPaper00051990
    WBPaper00052012
    WBPaper00052030
    WBPaper00052042
    WBPaper00053443
    WBPaper00054483
    WBPaper00056153
    WBPaper00057092
    WBPaper00057635
    WBPaper00057766
    WBPaper00057770
    WBPaper00057775
    WBPaper00058643
    WBPaper00059491
    WBPaper00060105
    WBPaper00060187
    WBPaper00060400
    WBPaper00060522
    WBPaper00060563
    WBPaper00061201
    WBPaper00061204
    WBPaper00062498
    WBPaper00063101
    WBPaper00063122
    WBPaper00063127
    WBPaper00064501
    WBPaper00064768
    WBPaper00064969
    WBPaper00065293
    WBPaper00066234
  Remark: Sequence connection from [Villeneuve AM]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene