WormBase Tree Display for Gene: WBGene00004807
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| WBGene00004807 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | skr-1 | Person_evidence | WBPerson322 | |||||
| Sequence_name | F46A9.5 | ||||||||
| Molecular_name | F46A9.5 | ||||||||
| F46A9.5.1 | |||||||||
| CE10580 | |||||||||
| Other_name | CELE_F46A9.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | skr-1 | ||||||||
| DB_info | Database | AceView | gene | 1K49 | |||||
| WormQTL | gene | WBGene00004807 | |||||||
| WormFlux | gene | WBGene00004807 | |||||||
| NDB | locus_tag | CELE_F46A9.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004807|UniProtKB=G5ECU1 | |||||||
| family | PTHR11165 | ||||||||
| NCBI | gene | 172775 | |||||||
| RefSeq | protein | NM_060112.8 | |||||||
| SwissProt | UniProtAcc | G5ECU1 | |||||||
| TREEFAM | TREEFAM_ID | TF354233 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECU1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | skr | ||||||||
| Allele (14) | |||||||||
| Strain | WBStrain00036440 | ||||||||
| WBStrain00005195 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (32) | |||||||||
| Ortholog (44) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | The skr-1 gene encodes a homolog of Skp1 in S. cerevisiae that is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis. | Paper_evidence (2) | ||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable cullin family protein binding activity. Involved in several processes, including negative regulation of intracellular signal transduction; regulation of cellular component organization; and regulation of protein stability. Predicted to be located in cytoplasm and nucleus. Expressed in several structures, including pharynx and spermatheca. Is an ortholog of human SKP1 (S-phase kinase associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F46A9.5 | |||||||
| Corresponding_transcript | F46A9.5.1 | ||||||||
| Other_sequence (144) | |||||||||
| Associated_feature | WBsf643588 | ||||||||
| WBsf643589 | |||||||||
| WBsf656751 | |||||||||
| WBsf656752 | |||||||||
| WBsf984704 | |||||||||
| WBsf218286 | |||||||||
| WBsf218287 | |||||||||
| WBsf218288 | |||||||||
| WBsf218289 | |||||||||
| Experimental_info | RNAi_result (53) | ||||||||
| Expr_pattern | Expr2437 | ||||||||
| Expr13172 | |||||||||
| Expr1013389 | |||||||||
| Expr1032386 | |||||||||
| Expr1151310 | |||||||||
| Expr2015847 | |||||||||
| Expr2034080 | |||||||||
| Drives_construct | WBCnstr00010827 | ||||||||
| WBCnstr00035375 | |||||||||
| Construct_product | WBCnstr00010827 | ||||||||
| WBCnstr00035375 | |||||||||
| WBCnstr00039337 | |||||||||
| Regulate_expr_cluster | WBPaper00050332:skr-1(RNAi)-skr-2(RNAi)_downregulated | ||||||||
| Antibody | WBAntibody00002336 | ||||||||
| WBAntibody00002337 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (235) | |||||||||
| WBProcess | WBbiopr:00000068 | ||||||||
| Map_info | Map | I | Position | 3.76789 | Error | 0.000506 | |||
| Positive | Positive_clone | F46A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005128 | ||||||||
| WBPaper00005129 | |||||||||
| WBPaper00018093 | |||||||||
| WBPaper00026593 | |||||||||
| WBPaper00027238 | |||||||||
| WBPaper00027294 | |||||||||
| WBPaper00027315 | |||||||||
| WBPaper00029122 | |||||||||
| WBPaper00029151 | |||||||||
| WBPaper00029221 | |||||||||
| WBPaper00030411 | |||||||||
| WBPaper00030844 | |||||||||
| WBPaper00031605 | |||||||||
| WBPaper00032114 | |||||||||
| WBPaper00033115 | |||||||||
| WBPaper00038411 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038627 | |||||||||
| WBPaper00042061 | |||||||||
| WBPaper00047669 | |||||||||
| WBPaper00048917 | |||||||||
| WBPaper00050332 | |||||||||
| WBPaper00050963 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058860 | |||||||||
| WBPaper00059745 | |||||||||
| WBPaper00060002 | |||||||||
| WBPaper00060142 | |||||||||
| WBPaper00063269 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
