WormBase Tree Display for Gene: WBGene00002056
expand all nodes | collapse all nodes | view schema
| WBGene00002056 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | ifc-2 | Person_evidence | WBPerson105 | |||||
| WBPerson293 | |||||||||
| WBPerson260 | |||||||||
| Sequence_name | M6.1 | ||||||||
| Molecular_name (19) | |||||||||
| Other_name | Cel IF C2 | Accession_evidence | X70832 | ||||||
| CelIF c2 | |||||||||
| ecp-1 | Paper_evidence | WBPaper00057164 | |||||||
| exc-2 | Person_evidence | WBPerson260 | |||||||
| Curator_confirmed | WBPerson51134 | ||||||||
| Date_last_updated | 07 Aug 2023 16:20:23 | ||||||||
| CELE_M6.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | ifc-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:26 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 09 Mar 2021 13:49:30 | WBPerson1983 | Name_change | Other_name | ecp-1 | ||||
| 3 | 07 Aug 2023 16:03:35 | WBPerson51134 | Event | Acquires_merge | WBGene00001363 | ||||
| 4 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | ifc-2 | ||||
| Other_name | exc-2 | ||||||||
| Acquires_merge | WBGene00001363 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ifc | ||||||||
| Allele (153) | |||||||||
| Legacy_information | [Buechner M] exc for excretory canal defect. Canals are very short and consist of a series of vacuoles. 100% penetrant. Usually visible by low-power microscopy. | ||||||||
| [C.elegansII] rh90 : excretory canal defect. Canals are very short and consist of a series of vacuoles. Luminal coat partly detached, floats in canal.100% penetrant.Usually visible by low-power microscopy. Affects tail spike ??? OA1: rh105. [NJ] | |||||||||
| Strain | WBStrain00002850 | ||||||||
| WBStrain00028840 | |||||||||
| WBStrain00047374 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (61) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | ifc-2 encodes three isoforms of an intermediate filament protein dispensable for viability but required for normal movement, growth rate, body size, body shape, and cuticle strength; IFC-2 is present in the cytoplasm of intestinal cells, and at the desmosomes of intestinal and pharyngeal cells. | Paper_evidence | WBPaper00001981 | |||||
| WBPaper00004761 | |||||||||
| WBPaper00005492 | |||||||||
| WBPaper00006137 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cytoskeleton. Involved in post-embryonic digestive tract morphogenesis. Located in cytoplasm and desmosome. Expressed in several structures, including excretory canal; pharyngeal-intestinal valve; pharynx; rectal valve cell; and uterus. Human ortholog(s) of this gene implicated in several diseases, including Dowling-Degos disease; ichthyosis (multiple); and palmoplantar keratosis (multiple). Is an ortholog of several human genes including KRT1 (keratin 1); KRT2 (keratin 2); and KRT3 (keratin 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (14) | ||||||||
| Molecular_info | Corresponding_CDS (6) | ||||||||
| Corresponding_CDS_history | M6.1a:wp272 | ||||||||
| M6.1b:wp272 | |||||||||
| M6.1c:wp272 | |||||||||
| Corresponding_transcript | M6.1a.1 | ||||||||
| M6.1a.2 | |||||||||
| M6.1b.1 | |||||||||
| M6.1c.1 | |||||||||
| M6.1d.1 | |||||||||
| M6.1e.1 | |||||||||
| M6.1f.1 | |||||||||
| Other_sequence | CR07924 | ||||||||
| FD516689.1 | |||||||||
| CBC09732_1 | |||||||||
| CJC02211_1 | |||||||||
| CBC03886_1 | |||||||||
| CSC00034_1 | |||||||||
| CRC05750_1 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern (17) | |||||||||
| Drives_construct | WBCnstr00003372 | ||||||||
| WBCnstr00036488 | |||||||||
| WBCnstr00042147 | |||||||||
| WBCnstr00042148 | |||||||||
| WBCnstr00042149 | |||||||||
| Construct_product | WBCnstr00036488 | ||||||||
| WBCnstr00042019 | |||||||||
| WBCnstr00042020 | |||||||||
| WBCnstr00042147 | |||||||||
| Antibody | WBAntibody00000563 | ||||||||
| WBAntibody00002893 | |||||||||
| WBAntibody00002913 | |||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (285) | |||||||||
| Interaction (77) | |||||||||
| Map_info | Map | X | Position | -19.5186 | Error | 0.005743 | |||
| Positive | Positive_clone | M6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4971 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001981 | ||||||||
| WBPaper00003721 | |||||||||
| WBPaper00004761 | |||||||||
| WBPaper00005485 | |||||||||
| WBPaper00010375 | |||||||||
| WBPaper00012337 | |||||||||
| WBPaper00014610 | |||||||||
| WBPaper00014967 | |||||||||
| WBPaper00015113 | |||||||||
| WBPaper00015411 | |||||||||
| WBPaper00018665 | |||||||||
| WBPaper00019618 | |||||||||
| WBPaper00021085 | |||||||||
| WBPaper00026926 | |||||||||
| WBPaper00027245 | |||||||||
| WBPaper00028004 | |||||||||
| WBPaper00030603 | |||||||||
| WBPaper00030667 | |||||||||
| WBPaper00031650 | |||||||||
| WBPaper00031849 | |||||||||
| WBPaper00036800 | |||||||||
| WBPaper00036842 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038564 | |||||||||
| WBPaper00040999 | |||||||||
| WBPaper00041022 | |||||||||
| WBPaper00042728 | |||||||||
| WBPaper00047346 | |||||||||
| WBPaper00048264 | |||||||||
| WBPaper00052179 | |||||||||
| WBPaper00054672 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056033 | |||||||||
| WBPaper00056896 | |||||||||
| WBPaper00057164 | |||||||||
| WBPaper00057758 | |||||||||
| WBPaper00057939 | |||||||||
| WBPaper00059330 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00061750 | |||||||||
| WBPaper00065558 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
