WormBase Tree Display for Gene: WBGene00001585
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| WBGene00001585 | SMap | S_parent | Sequence | M04B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gfl-1 | Person_evidence | WBPerson206 | |||||
| Sequence_name | M04B2.3 | ||||||||
| Molecular_name | M04B2.3 | ||||||||
| M04B2.3.1 | |||||||||
| CE12388 | |||||||||
| Other_name | CELE_M04B2.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | gfl-1 | ||||||||
| DB_info | Database | AceView | gene | 4M287 | |||||
| WormQTL | gene | WBGene00001585 | |||||||
| WormFlux | gene | WBGene00001585 | |||||||
| NDB | locus_tag | CELE_M04B2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001585|UniProtKB=Q21501 | |||||||
| family | PTHR23195 | ||||||||
| NCBI | gene | 187434 | |||||||
| RefSeq | protein | NM_069771.2 | |||||||
| TrEMBL | UniProtAcc | Q21501 | |||||||
| UniProt_GCRP | UniProtAcc | Q21501 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gfl | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00036024 | ||||||||
| WBStrain00036032 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00013692 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gfl-1 encodes an ortholog of human GLIOMA-AMPLIFIED SEQUENCE-41 (GAS41; OMIM:602116, found in increased copy number in low-grade glioma); loss of GLF-1, which is predicted to associate with chromatin, results in potent suppression of the RNA interference (RNAi) mechanism; GLF-1 is also similar to the transcription factors (yeast and human) AF-9 and human ENL, and thus may represent a novel class of transcription factors. | Paper_evidence | WBPaper00005193 | |||||
| WBPaper00013026 | |||||||||
| WBPaper00013597 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable chromatin binding activity and histone binding activity. Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Is an ortholog of human YEATS4 (YEATS domain containing 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M04B2.3 | |||||||
| Corresponding_transcript | M04B2.3.1 | ||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf646382 | ||||||||
| WBsf646383 | |||||||||
| WBsf976976 | |||||||||
| WBsf976977 | |||||||||
| WBsf997859 | |||||||||
| WBsf997860 | |||||||||
| WBsf1018216 | |||||||||
| WBsf229164 | |||||||||
| Transcription_factor | WBTranscriptionFactor000174 | ||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern (5) | |||||||||
| Drives_construct | WBCnstr00036844 | ||||||||
| Construct_product | WBCnstr00036844 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | IV | Position | 4.99219 | Error | 0.001448 | |||
| Positive | Positive_clone | M04B2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4863 | |||||||
| 4832 | |||||||||
| 4487 | |||||||||
| 5044 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005193 | ||||||||
| WBPaper00026593 | |||||||||
| WBPaper00026665 | |||||||||
| WBPaper00027309 | |||||||||
| WBPaper00027634 | |||||||||
| WBPaper00031487 | |||||||||
| WBPaper00033915 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041023 | |||||||||
| WBPaper00043989 | |||||||||
| WBPaper00045091 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
