WormBase Tree Display for Gene: WBGene00000216
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| WBGene00000216 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | H22K11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | asp-3 | Person_evidence | WBPerson184 | |||||
| Sequence_name | H22K11.1 | ||||||||
| Molecular_name | H22K11.1 | ||||||||
| H22K11.1.1 | |||||||||
| CE47856 | |||||||||
| Other_name | CELE_H22K11.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | asp-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | asp | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00051696 | ||||||||
| WBStrain00055639 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | asp-3 encodes an aspartyl protease homolog that is required, in parallel with ASP-4 but downstream of CLP-1 and TRA-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf). | Paper_evidence | WBPaper00005513 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable aspartic-type endopeptidase activity. Involved in programmed necrotic cell death. Located in lysosome. Expressed in intestine and uterus. Is an ortholog of human NAPSA (napsin A aspartic peptidase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H22K11.1 | |||||||
| Corresponding_transcript | H22K11.1.1 | ||||||||
| Other_sequence (229) | |||||||||
| Associated_feature | WBsf662316 | ||||||||
| WBsf662911 | |||||||||
| WBsf982190 | |||||||||
| WBsf1005643 | |||||||||
| WBsf1005644 | |||||||||
| WBsf1023141 | |||||||||
| WBsf235869 | |||||||||
| WBsf235870 | |||||||||
| WBsf235871 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern (6) | |||||||||
| Drives_construct | WBCnstr00037656 | ||||||||
| Construct_product | WBCnstr00037656 | ||||||||
| Antibody | WBAntibody00002873 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (245) | |||||||||
| Interaction (131) | |||||||||
| Map_info | Map | X | Position | -2.42178 | Error | 0.004086 | |||
| Positive | Positive_clone | H22K11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004299 | ||||||||
| WBPaper00005513 | |||||||||
| WBPaper00005753 | |||||||||
| WBPaper00005976 | |||||||||
| WBPaper00006018 | |||||||||
| WBPaper00017889 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00026694 | |||||||||
| WBPaper00027349 | |||||||||
| WBPaper00028758 | |||||||||
| WBPaper00028966 | |||||||||
| WBPaper00030985 | |||||||||
| WBPaper00031025 | |||||||||
| WBPaper00031238 | |||||||||
| WBPaper00035577 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041673 | |||||||||
| WBPaper00043670 | |||||||||
| WBPaper00047325 | |||||||||
| WBPaper00047504 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00050671 | |||||||||
| WBPaper00052763 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00059755 | |||||||||
| WBPaper00062277 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00062473 | |||||||||
| WBPaper00065693 | |||||||||
| Remark | Sequence connection from [Freedman J] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
