WormBase Tree Display for Gene: WBGene00000185
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| WBGene00000185 | SMap | S_parent | Sequence | F31A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | arg-1 | Person_evidence | WBPerson498 | |||||
| Sequence_name | F31A9.3 | ||||||||
| Molecular_name | F31A9.3 | ||||||||
| F31A9.3.1 | |||||||||
| CE35514 | |||||||||
| Other_name | CELE_F31A9.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | arg-1 | ||||||||
| DB_info | Database | AceView | gene | XC407 | |||||
| WormQTL | gene | WBGene00000185 | |||||||
| SignaLink | protein | WBGene00000185 | |||||||
| WormFlux | gene | WBGene00000185 | |||||||
| NDB | locus_tag | CELE_F31A9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000185|UniProtKB=H2KYS0 | |||||||
| family | PTHR24033 | ||||||||
| NCBI | gene | 180501 | |||||||
| RefSeq | protein | NM_001029444.1 | |||||||
| TrEMBL | UniProtAcc | H2KYS0 | |||||||
| UniProt_GCRP | UniProtAcc | H2KYS0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | arg | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00030577 | ||||||||
| WBStrain00030578 | |||||||||
| WBStrain00032982 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021842 | ||||||||
| 00021843 | |||||||||
| 00021844 | |||||||||
| 00106960 | |||||||||
| 00106961 | |||||||||
| Ortholog | Csp5_scaffold_00906.g16631 | Caenorhabditis sinica | From_analysis | WormBase-Compara | |||||
| GCK72_025828 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_X0111600 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| Sp34_X0126400 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| Sp34_X0151800 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g18504 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (7) | |||||||||
| Structured_description | Concise_description | arg-1 encodes a member of the Delta/Serrate/LAG-2 family of transmembrane signaling ligands; arg-1 mediates cell fate decisions during early embryogenesis and in addition, is a downstream target of HLH-8/CeTwist, which binds E box sequences in the arg-1 promoter and is required for fate specification of a subset of mesodermal cells; arg-1 is closely related to apx-1 and lag-2 and is functionally interchangeable with them; an arg-1::gfp reporter is expressed in the vm1 vulval muscles, the intestinal, anal depressor, and anal sphincter muscles, and the head mesoderm cell. | Paper_evidence | WBPaper00002357 | |||||
| WBPaper00002479 | |||||||||
| WBPaper00027104 | |||||||||
| WBPaper00029191 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 21 Mar 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable Notch binding activity. Predicted to be involved in cell communication. Predicted to be located in membrane. Expressed in several structures, including head mesodermal cell; male distal tip cell; non-striated muscle; somatic gonad precursor; and tail. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F31A9.3 | |||||||
| Corresponding_CDS_history | F31A9.3:wp108 | ||||||||
| F31A9.3b:wp271 | |||||||||
| Corresponding_transcript | F31A9.3.1 | ||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result (21) | ||||||||
| Expr_pattern (11) | |||||||||
| Drives_construct | WBCnstr00000220 | ||||||||
| WBCnstr00000221 | |||||||||
| WBCnstr00000684 | |||||||||
| WBCnstr00006548 | |||||||||
| WBCnstr00010979 | |||||||||
| WBCnstr00013468 | |||||||||
| WBCnstr00037678 | |||||||||
| Construct_product | WBCnstr00037678 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (72) | |||||||||
| Interaction (71) | |||||||||
| WBProcess | WBbiopr:00000072 | ||||||||
| Map_info | Map | X | Position | -17.544 | Error | 0.021534 | |||
| Positive | Positive_clone | F31A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| JP#L223 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002357 | ||||||||
| WBPaper00003372 | |||||||||
| WBPaper00005080 | |||||||||
| WBPaper00006450 | |||||||||
| WBPaper00010387 | |||||||||
| WBPaper00010590 | |||||||||
| WBPaper00010793 | |||||||||
| WBPaper00010810 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00017594 | |||||||||
| WBPaper00019450 | |||||||||
| WBPaper00021984 | |||||||||
| WBPaper00026390 | |||||||||
| WBPaper00026440 | |||||||||
| WBPaper00027104 | |||||||||
| WBPaper00027873 | |||||||||
| WBPaper00029191 | |||||||||
| WBPaper00034675 | |||||||||
| WBPaper00040714 | |||||||||
| WBPaper00042381 | |||||||||
| WBPaper00056826 | |||||||||
| WBPaper00064415 | |||||||||
| WBPaper00065281 | |||||||||
| WBPaper00065757 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
