WormBase Tree Display for Gene: WBGene00016167

WBGene00016167 SMap: S_parent: Sequence: C27F2
  Identity: Version: 2
    Name: CGC_name: vps-22 Person_evidence: WBPerson3188
      Sequence_name: C27F2.5
      Molecular_name: C27F2.5
        C27F2.5.1
        CE26875
        C27F2.5.2
      Other_name: CELE_C27F2.5 Accession_evidence: NDB BX284603
      Public_name: vps-22
    DB_info: Database: AceView gene 3G52+3G50
            3G50
        WormQTL gene WBGene00016167
        WormFlux gene WBGene00016167
        NDB locus_tag CELE_C27F2.5
        Panther gene CAEEL|WormBase=WBGene00016167|UniProtKB=Q18258
          family PTHR12806
        NCBI gene 175672
        RefSeq protein NM_065651.8
        TREEFAM TREEFAM_ID TF105950
        TrEMBL UniProtAcc Q18258
        UniProt_GCRP UniProtAcc Q18258
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Feb 2009 16:18:19 WBPerson2970 Name_change: CGC_name: vps-22
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vps
    Allele (30)
    RNASeq_FPKM (74)
    GO_annotation: 00060797
      00060798
      00060799
      00060800
      00060801
      00121861
      00121862
    Contained_in_operon: CEOP3248
    Ortholog (32)
    Structured_description: Concise_description: C27F2.5 encodes the C. elegans ortholog of the conserved vacuolar protein sorting protein EAP30/SNF8/VPS22; by homology, the product of C27F2.5 is predicted to be a component of an ESCRT-II complex (Endosomal Sorting Complex Required for Transport) that functions in endosomal transport. Paper_evidence: WBPaper00026641
          Curator_confirmed: WBPerson1843
          Date_last_updated: 31 Jul 2007 00:00:00
      Automated_description: Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT II complex. Expressed in body wall musculature; pharyngeal muscle cell; pharynx; and vulval muscle. Is an ortholog of human SNF8 (SNF8 subunit of ESCRT-II). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C27F2.5
    Corresponding_CDS_history (2)
    Corresponding_transcript: C27F2.5.1
      C27F2.5.2
    Other_sequence (54)
    Associated_feature: WBsf651025
      WBsf226616
  Experimental_info: RNAi_result: WBRNAi00070539 Inferred_automatically: RNAi_primary
      WBRNAi00070866 Inferred_automatically: RNAi_primary
      WBRNAi00041362 Inferred_automatically: RNAi_primary
      WBRNAi00070538 Inferred_automatically: RNAi_primary
      WBRNAi00076170 Inferred_automatically: RNAi_primary
      WBRNAi00067016 Inferred_automatically: RNAi_primary
      WBRNAi00070867 Inferred_automatically: RNAi_primary
      WBRNAi00078462 Inferred_automatically: RNAi_primary
      WBRNAi00070540 Inferred_automatically: RNAi_primary
      WBRNAi00041363 Inferred_automatically: RNAi_primary
      WBRNAi00091528 Inferred_automatically: RNAi_primary
      WBRNAi00070537 Inferred_automatically: RNAi_primary
      WBRNAi00041368 Inferred_automatically: RNAi_primary
      WBRNAi00005267 Inferred_automatically: RNAi_primary
      WBRNAi00011269 Inferred_automatically: RNAi_primary
      WBRNAi00001207 Inferred_automatically: RNAi_primary
      WBRNAi00091530 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr12774
      Expr12778
      Expr15896
      Expr1013359
      Expr1036920
      Expr1145400
      Expr2018014
      Expr2036151
    Drives_construct: WBCnstr00022878
      WBCnstr00028279
      WBCnstr00042586
    Construct_product: WBCnstr00022878
      WBCnstr00028279
      WBCnstr00042586
    Microarray_results (34)
    Expression_cluster (77)
    Interaction (48)
  Map_info: Map: III Position: -2.30024 Error: 0.00462
    Positive: Positive_clone: C27F2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026641
    WBPaper00038372
    WBPaper00038491
    WBPaper00040674
    WBPaper00043249
    WBPaper00055090
    WBPaper00064934
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene